Hi, Please keep all correspondence on list so that others can help (ie. make sure that bioconductor at r-help.org appears in the CC field of your replies -- easy to do by pressing "reply all") Comments in line: On Mon, Feb 28, 2011 at 11:31 PM, kalesh karun <karunkmk at="" gmail.com=""> wrote: > > >> sir , following are the complete information > > > > R version: R 2.12.1 > > O S : windows 7 (prof) > > command :? source("http://bioconductor.org/biocLite.R") > > error : "Error in file(file, "r", encoding = encoding) : >> ?cannot open the connection >> In addition: Warning message: >> In file(file, "r", encoding = encoding) : >> ?unable to connect to 'bioconductor.org' on port 80." > > > I am able to access: > http://permalink.gmane.org/gmane.science.biology.informatics.conduct or/32569 I didn't paste that URL to see if you can simply access it ... I actually wanted you to read it :-) The original poster was apparently having the same problems as you, and Martin Morgan suggested that the solution to the problem the original poster (and now you) are apparently having might be found by looking through the resources available at: http://cran.r-project.org/faqs.html Specifically the windows faq: http://cran.r-project.org/bin/windows/base/rw-FAQ.html > and I am working under proxy internet connection. Yes, exactly. I'm guessing section 2.19 of the windows FAQ ("The Internet download functions fail") might be useful to you. -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology ?| Memorial Sloan-Kettering Cancer Center ?| Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact

Hi, On Tue, Mar 1, 2011 at 1:46 AM, kalesh karun <karunkmk at="" gmail.com=""> wrote: > sir, > Am not able to solve the problem, what may be the reason? (i) Kindly outline the steps you've tried to solve your problem. (ii) Can you install other R packages from cran via the "install.packages" function ... try installing plyr for example: R> install.packages('plyr') What happens? -steve > > On Tue, Mar 1, 2011 at 10:29 AM, Steve Lianoglou > <mailinglist.honeypot at="" gmail.com=""> wrote: >> >> Hi, >> >> Please keep all correspondence on list so that others can help (ie. >> make sure that bioconductor at r-help.org appears in the CC field of your >> replies -- easy to do by pressing "reply all") >> >> Comments in line: >> >> On Mon, Feb 28, 2011 at 11:31 PM, kalesh karun <karunkmk at="" gmail.com=""> wrote: >> > >> > >> >> sir , following are the complete information >> > >> > >> > >> > R version: R 2.12.1 >> > >> > O S : windows 7 (prof) >> > >> > command :? source("http://bioconductor.org/biocLite.R") >> > >> > error : "Error in file(file, "r", encoding = encoding) : >> >> ?cannot open the connection >> >> In addition: Warning message: >> >> In file(file, "r", encoding = encoding) : >> >> ?unable to connect to 'bioconductor.org' on port 80." >> > >> > >> > I am able to access: >> > >> > http://permalink.gmane.org/gmane.science.biology.informatics.cond uctor/32569 >> >> I didn't paste that URL to see if you can simply access it ?... I >> actually wanted you to read it :-) >> >> The original poster was apparently having the same problems as you, >> and Martin Morgan suggested that the solution to the problem the >> original poster (and now you) are apparently having might be found by >> looking through the resources available at: >> >> http://cran.r-project.org/faqs.html >> >> Specifically the windows faq: >> >> http://cran.r-project.org/bin/windows/base/rw-FAQ.html >> >> > and I am working under proxy internet connection. >> >> Yes, exactly. >> >> I'm guessing section 2.19 of the windows FAQ ("The Internet download >> functions fail") might be useful to you. >> >> -steve >> >> -- >> Steve Lianoglou >> Graduate Student: Computational Systems Biology >> ?| Memorial Sloan-Kettering Cancer Center >> ?| Weill Medical College of Cornell University >> Contact Info: http://cbio.mskcc.org/~lianos/contact > > -- Steve Lianoglou Graduate Student: Computational Systems Biology ?| Memorial Sloan-Kettering Cancer Center ?| Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact

sir, Am not able to solve the problem, what may be the reason? On Tue, Mar 1, 2011 at 10:29 AM, Steve Lianoglou < mailinglist.honeypot@gmail.com> wrote: > Hi, > > Please keep all correspondence on list so that others can help (ie. > make sure that bioconductor@r-help.org appears in the CC field of your > replies -- easy to do by pressing "reply all") > > Comments in line: > > On Mon, Feb 28, 2011 at 11:31 PM, kalesh karun <karunkmk@gmail.com> wrote: > > > > > >> sir , following are the complete information > > > > > > > > R version: R 2.12.1 > > > > O S : windows 7 (prof) > > > > command : source("http://bioconductor.org/biocLite.R") > > > > error : "Error in file(file, "r", encoding = encoding) : > >> cannot open the connection > >> In addition: Warning message: > >> In file(file, "r", encoding = encoding) : > >> unable to connect to 'bioconductor.org' on port 80." > > > > > > I am able to access: > > > http://permalink.gmane.org/gmane.science.biology.informatics.conduct or/32569 > > I didn't paste that URL to see if you can simply access it ... I > actually wanted you to read it :-) > > The original poster was apparently having the same problems as you, > and Martin Morgan suggested that the solution to the problem the > original poster (and now you) are apparently having might be found by > looking through the resources available at: > > http://cran.r-project.org/faqs.html > > Specifically the windows faq: > > http://cran.r-project.org/bin/windows/base/rw-FAQ.html > > > and I am working under proxy internet connection. > > Yes, exactly. > > I'm guessing section 2.19 of the windows FAQ ("The Internet download > functions fail") might be useful to you. > > -steve > > -- > Steve Lianoglou > Graduate Student: Computational Systems Biology > | Memorial Sloan-Kettering Cancer Center > | Weill Medical College of Cornell University > Contact Info: http://cbio.mskcc.org/~lianos/contact > [[alternative HTML version deleted]]