Dear bioconductor-listers, I would like to hear your suggestions/recommendations on if there are tools of LD/recombination rate measurement in R/bioconductor, especially tools for whole-genome-level population genetic data, not just for a small set of markers. There are tools for this analysis outside R/bioconductor, like LDhat. Months ago, I was pointed to snpMatrix2 packages. But, I have not find a right way for me to implement snpMatrix2 in my study. So, I hope to get your helps/directions. Best regards, Jian-Feng,