>Message: 3 >Date: Mon, 28 Mar 2011 14:36:28 +0200 >From: Guido Leoni<guido.leoni at="" gmail.com=""> >To:<bioconductor at="" stat.math.ethz.ch=""> >Subject: [BioC] Problem with oneChannelGUI >Message-ID: > <aanlktinethedn0tr41q2mva6j-pvun9shw2vguox08hy at="" mail.gmail.com=""> >Content-Type: text/plain >Dear List >I updated my R version to 2.12 and reinstalled all the oldest packages. >Now I'm trying to use oneChannelGUI in order to analyze some gene 1.0 St > microarrays. >Every time I try to normalize my data with the apt of affymetrix I retrieve >the following error >apt-probeset-summarize: relocation error: /lib/libnss_files.so.2: symbol >__rawmemchr, version GLIBC_2.2.5 not defined in file libc.so.6 with link >time reference > >OnechannelGUI worked fine with R 2.10... >Please can someone give to me any suggestion? >thank you very much >Guido Leoni Hi Guido, oneChannelGUI use the external installation of apt tools from affymetrix. The error you encountered it seems to be related to some problem with the version of apt tools you are using. have you reinstalled the apt tools? which version of apt-tools are you using? .... sorry for the stupid question.... are you sure that you have installed the right version for your hardware? Could please execute the following commands in R and send me the output? sessionInfo() affylmGUIenvironment$aptDir affylmGUIenvironment$libDirLocation Cheers Raffaele -- ---------------------------------------- Prof. Raffaele A. Calogero Bioinformatics and Genomics Unit MBC Centro di Biotecnologie Molecolari Via Nizza 52, Torino 10126 tel. ++39 0116706457 Fax ++39 0116706487 Mobile ++39 3333827080 email: raffaele.calogero at unito.it raffaele[dot]calogero[at]gmail[dot]com www: http://www.bioinformatica.unito.it

Hi Raffaele Thank you very much It was my fault (obviously...).I reinstalled the latest version of affymetrix apt and everything works Cheers Guido 2011/3/29 rcaloger <raffaele.calogero@gmail.com> > Message: 3 >> Date: Mon, 28 Mar 2011 14:36:28 +0200 >> From: Guido Leoni<guido.leoni@gmail.com> >> To:<bioconductor@stat.math.ethz.ch> >> Subject: [BioC] Problem with oneChannelGUI >> Message-ID: >> <aanlktinethedn0tr41q2mva6j- pvun9shw2vguox08hy@mail.gmail.com=""> >> Content-Type: text/plain >> > > Dear List >> I updated my R version to 2.12 and reinstalled all the oldest packages. >> Now I'm trying to use oneChannelGUI in order to analyze some gene 1.0 St >> microarrays. >> Every time I try to normalize my data with the apt of affymetrix I >> retrieve >> the following error >> > > apt-probeset-summarize: relocation error: /lib/libnss_files.so.2: symbol >> __rawmemchr, version GLIBC_2.2.5 not defined in file libc.so.6 with link >> time reference >> >> OnechannelGUI worked fine with R 2.10... >> Please can someone give to me any suggestion? >> thank you very much >> Guido Leoni >> > > Hi Guido, > oneChannelGUI use the external installation of apt tools from affymetrix. > The error you encountered it seems to be related to some problem with the > version of apt tools you are using. > > have you reinstalled the apt tools? > which version of apt-tools are you using? > > .... sorry for the stupid question.... > are you sure that you have installed the right version for your hardware? > > Could please execute the following commands in R and send me the output? > sessionInfo() > affylmGUIenvironment$aptDir > affylmGUIenvironment$libDirLocation > > Cheers > Raffaele > > -- > > ---------------------------------------- > Prof. Raffaele A. Calogero > Bioinformatics and Genomics Unit > MBC Centro di Biotecnologie Molecolari > Via Nizza 52, Torino 10126 > tel. ++39 0116706457 > Fax ++39 0116706487 > Mobile ++39 3333827080 > email: raffaele.calogero@unito.it > raffaele[dot]calogero[at]gmail[dot]com > www: http://www.bioinformatica.unito.it > > > -- Guido Leoni National Research Institute on Food and Nutrition (I.N.R.A.N.) via Ardeatina 546 00178 Rome Italy tel + 39 06 51 49 41 (operator) + 39 06 51 49 4498 (direct) [[alternative HTML version deleted]]