Hi group, I have a basic question regarding the qvalue package.The fuction qvalue for the given pvalues generates qvalue.If I am interested in getting the pFDR is it the same or do I have to give robust = TRUE for its generation. >library(qvalue) > p <- scan(“pvalues.txt”) > qobj <- qvalue(p,robust=TRUE) > qwrite(qobj, filename=“myresults.txt”) I am basically interested in getting the pFDR values from the pvalues that I input.How do I get them using this package? waiting for ur reply, Thanks, Viritha [[alternative HTML version deleted]]