Hello Bioconductor folks!!! I’m having problem installing GEOquery on window 7. I did following steps to install the same. > source('http://www.bioconductor.org/biocLite.R') #site from where one need to install package. >biocLite("GEOquery",depencencies=TRUE) # package to install I can see that my package is installed as C:\Users\username\Documents\R\win-library\2.12\ My R version 2.12.1 is installed at C:\Program Files\R\R-2.12.1. I also modified the Path in the window Environmental variable to make sure to access the path where my R packages are installed for bioconductor. I can see that R console access the package library. > library(GEOquery) # this seems that package is accessible from R console However, i can’t see function in the above mentioned library via below command. > data <- GEOquery(GEO='GSE13639'), giving Error: could not find function "GEOquery". Any suggestions for GEOquery installation. Gaurav -- ---------------------- PhD Student (Bioinformatics/Computational Biology) Prof. Shoba Ranganathan Lab Dept. of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia. URL:http://gauravkumar.org [[alternative HTML version deleted]]

Hi, Gaurav. See below.... Sean On Mon, May 2, 2011 at 9:38 AM, Gaurav Kumar <gaurav.kumar@mq.edu.au> wrote: > Hello Bioconductor folks!!! > > I’m having problem installing GEOquery on window 7. I did following steps > to install the same. > > > source('http://www.bioconductor.org/biocLite.R') #site from where one > need > to install package. > > >biocLite("GEOquery",depencencies=TRUE) # package to install > > I can see that my package is installed as > C:\Users\username\Documents\R\win-library\2.12\ > > My R version 2.12.1 is installed at C:\Program Files\R\R-2.12.1. > > I also modified the Path in the window Environmental variable to make sure > to access the path where my R packages are installed for bioconductor. I > can > see that R console access the package library. > > > library(GEOquery) # this seems that package is accessible from R console > > However, i can’t see function in the above mentioned library via below > command. > > > data <- GEOquery(GEO='GSE13639'), giving Error: could not find function > "GEOquery". > > GEOquery is not a function in GEOquery. The function you want is getGEO(). Feel free to peruse the vignette and the help for GEOquery to get more information. > > Any suggestions for GEOquery installation. > > Gaurav > > -- > ---------------------- > PhD Student (Bioinformatics/Computational Biology) > Prof. Shoba Ranganathan Lab > Dept. of Chemistry and Biomolecular Sciences, > Macquarie University, Sydney, Australia. > > URL:http://gauravkumar.org > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]