I would like to receive suggestions of books about analyses of cDNA microarrays. I would appreciate a lot if in these books there were examples of analyses, essentialy of analyses involving factorial design. If this is possible, please, send the suggestions for my e-mail address. I intend to buy them by internet (e-commerce). Thanks very much -- Marcelo Luiz de Laia, M.Sc. Dep. de Tecnologia, Lab. Bioqu?mica e de Biologia Molecular Universidade Estadual Paulista - UNESP Via de Acesso Prof. Paulo Donato Castelane, Km 05 14.884-900 - Jaboticabal, SP, Brazil PhoneFax: 16 3209-2675/2676/2677 R. 202/208/203 (trab.) HomePhone: 16 3203 2328 - www.lbm.fcav.unesp.br - mlaia@yahoo.com

Both "Microarray Bioinformatics" by Dov Stekel, and "Statistical Analysis of Gene Expression Microarray Data" edited by Terry Speed, are excellent books. Apart from that, I find the Bioconductor mailing lists and documentation an essential resource, as is the microarray- norm@ebi.ac.uk mailing list. Thanks Mick -----Original Message----- From: Marcelo Luiz de Laia [mailto:mlaia@fcav.unesp.br] Sent: 10 March 2004 10:50 To: bioconductor@stat.math.ethz.ch Subject: [BioC] suggestions of books I would like to receive suggestions of books about analyses of cDNA microarrays. I would appreciate a lot if in these books there were examples of analyses, essentialy of analyses involving factorial design. If this is possible, please, send the suggestions for my e-mail address. I intend to buy them by internet (e-commerce). Thanks very much -- Marcelo Luiz de Laia, M.Sc. Dep. de Tecnologia, Lab. Bioqu?mica e de Biologia Molecular Universidade Estadual Paulista - UNESP Via de Acesso Prof. Paulo Donato Castelane, Km 05 14.884-900 - Jaboticabal, SP, Brazil PhoneFax: 16 3209-2675/2676/2677 R. 202/208/203 (trab.) HomePhone: 16 3203 2328 - www.lbm.fcav.unesp.br - mlaia@yahoo.com _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor

Hello All, I believe this has been discussed before. I am interested in plotting probe set CV or SE versus intensity for a number of U133A chips with the goal of trying to detect what the lowest intensity I can trust would be. Would anybody have any detailed documentation on how to do this? Many thanks, Lawrence _______________________________ Lawrence-Paul Petalidis Ph.D Candidate Department of Pathology Division of Molecular Histopathology University of Cambridge

Here are the addresses for the microarray book list. http://www.nslij-genetics.org/microarray/book.html http://ihome.cuhk.edu.hk/~b400559/book_mray.html For the beging you can try these books. Microarray Bioinformatics ~ Dov Stekel -- (Paperback - September 8, 2003) Guide to Analysis of DNA Microarray Data ~ Steen Knudsen -- (Paperback - March 12, 2004) This book is more advanced. Exploration and Analysis of DNA Microarray and Protein Array Data ~D. Amaratunga, Javier Cabrera John Wiley & Sons Inc. Hope this helps. Narendra Kaushik [[alternative HTML version deleted]]