Hi, I have installed R-2.12.2 on my linux system and have installed various biocondutor (verison 2.5.11) packages without issue. However, I am trying to install the bioconductor package BayesPeak and it requires bioconductor version 2.6 or later How do I upgrade the Bioconductore package? I have run: |source("http://bioconductor.org/biocLite.R") update.packages(repos=biocinstallRepos(), ask=FALSE, checkBuilt=TRUE) | But it did not resolve the issue. I also ran |biocLite() | But it just pulls/downloads packages from bioconductor/packages/2.5 dir.... how do I change this. -- Thanks Mary Ellen Mary Ellen FitzPatrick Systems Analyst Bioinformatics Boston University 24 Cummington St. Boston, MA 02215 office 617-358-2771 cell 617-797-7856 mfitzpat at bu.edu

Never mind I figured it out. Mary Ellen Fitzpatrick wrote: > Hi, > > I have installed R-2.12.2 on my linux system and have installed various > biocondutor (verison 2.5.11) packages without issue. > However, I am trying to install the bioconductor package BayesPeak and > it requires bioconductor version 2.6 or later > > How do I upgrade the Bioconductore package? > > I have run: > > |source("http://bioconductor.org/biocLite.R") > update.packages(repos=biocinstallRepos(), ask=FALSE, checkBuilt=TRUE) > | > > > But it did not resolve the issue. > > I also ran > > |biocLite() > > | > > But it just pulls/downloads packages from bioconductor/packages/2.5 > dir.... how do I change this. > > > -- Thanks Mary Ellen Mary Ellen FitzPatrick Systems Analyst Bioinformatics Boston University 24 Cummington St. Boston, MA 02215 office 617-358-2771 cell 617-797-7856 mfitzpat at bu.edu