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viritha kaza
▴
580
@viritha-kaza-4318
Last seen 10.3 years ago
Hi group,
I am trying to right a code to do the following
This is how the test file looks like:
Chr
start
end
sample1
sample2
chr2
9896633
9896683
0
0
chr2
9896630
9896690
0
0
chr2
14314039
14314098
0
-0.35
chr2
14404467
14404502
0
-0.35
chr2
14421718
14421777
-0.43
-0.35
chr2
16031710
16031769
-0.43
-0.35
chr2
16036178
16036237
-0.43
-0.35
chr2
16048665
16048724
-0.43
-0.35
chr2
37491676
37491735
0
0
chr2
37702947
37703009
0
0
Now I want to summarize the values like
Sample
Chr
Start
End
Values
Probes
1
chr2
9896633
14404502
0
4
1
chr2
14421718
16048724
-0.43
4
1
chr2
37491676
37703001
0
2
2
chr2
9896633
9896690
0
2
2
chr2
14314039
16048724
-0.35
6
2
chr2
37491676
37703009
0
2
Here the start for the first line would be the least value until
values are
similiar (4) then the end would be highest value. The values is the
unique
value among the common values.
Can I get some ideas or suggestions to perform this because I am new
to hard
core program in R?
waiting for your suggestions,
Thanks,
Viritha
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