Dear Sean, thanks for your quick reply. BLAT accepts peptides greater than 20 a.a, so i was wondering if Bioconductor provides any module to translate genome into six-frames and then perform a search against the same. Regards, On Sun, Sep 25, 2011 at 5:11 PM, Sean Davis <sdavis2@mail.nih.gov> wrote: > Try blat from UCSC. You can either use the web interface or download the > executable. > > Sean > On Sep 25, 2011 2:30 AM, "Srinivas M. Srikanth" < > srikanth@ibioinformatics.org> wrote: > > Hi All, > > > > I have several peptide sequences and what to know where they map onto to > > genome, I was using tblastn suite but results are very very slow. Can > anyone > > suggest any module in R which could help solve the problem? > > > > Regards, > > > > > > -- > > Srinivas M. Srikanth > > Ph.D. Student > > Institute of Bioinformatics > > Discoverer, 7th Floor, > > International Technology Park, > > Bangalore, India > > Mob:+919019114878 > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Srinivas M. Srikanth Ph.D. Student Institute of Bioinformatics Discoverer, 7th Floor, International Technology Park, Bangalore, India Mob:+919019114878 [[alternative HTML version deleted]]