On Tue, Sep 27, 2011 at 2:26 PM, Dan Tenenbaum <dtenenba at="" fhcrc.org=""> wrote: > On Tue, Sep 27, 2011 at 10:55 AM, Kasper Daniel Hansen > <kasperdanielhansen at="" gmail.com=""> wrote: >> On Tue, Sep 27, 2011 at 1:43 PM, Dan Tenenbaum <dtenenba at="" fhcrc.org=""> wrote: >>> Hi Kasper, >>> >>> On Tue, Sep 27, 2011 at 7:52 AM, Kasper Daniel Hansen >>> <kasperdanielhansen at="" gmail.com=""> wrote: >>>> It seems that Rcompression (from omegahat) is not available through >>>> biocLite anymore (or, at least I believe it used to be available). ?I >>>> may be missing something here, but didn't we use to be able to get >>>> omegahat packages through biocLite. ?Or is this something specific to >>>> Rcompression? >>>> >>> >>> What version of R and what OS are you using? >>> >>> I just did a quick check on Linux and Windows, R-2.13 and R-2.14, and >>> biocinstallRepos() (the function that tells biocLite() where to look) >>> does not include the Omegahat repository on any of them. >> >> I have been checking 2.13 and devel for Linux and OS X. ?Just to be >> clear: I see the same as you (that omegahat is not included). ?I seem >> to recall that omegahat used to be included, but I am probably >> completely wrong. > > We have not ?included Omegahat as long as anyone here can remember. > We do point to our own extra repository which includes some Omegahat > packages, but ?Rcompression has never been in that repository, at > least since BioC 1.8. > > Some Omegahat packages, such as XML, are available in CRAN, which > could account for this, but it doesn't look like Rcompression is one > of them. Thanks; I was clearly wrong. Sorry for the noise. Kasper