annotate histograms
1
0
Entering edit mode
Wendy Qiao ▴ 360
@wendy-qiao-4501
Last seen 10.2 years ago
Hi all, I am plot the gene expression data using histograms. I want to mark the expression of certain level of certain genes on the figure as shown in sure here<http: nar.oxfordjournals.org="" content="" 39="" suppl_1="" d1011="" f1.expansi="" on.html="">. Does anybody know how to add the red markers under bars. Thank you in advance. Wendy [[alternative HTML version deleted]]
• 1.1k views
ADD COMMENT
0
Entering edit mode
@janet-l-smith-4332
Last seen 10.2 years ago
Set the y-axis on your histogram to start at a negative value, then use segments to draw the lines. hist (your_data, ylim=c(-10,100)) segments (15,-0, 15, -20, col="red") Janet Smith Research Scientist Department of Biology MIT Building 68-540D Cambridge, MA 02139 ________________________________________ From: bioconductor-bounces@r-project.org [bioconductor- bounces@r-project.org] On Behalf Of Wendy Qiao [wendy2.qiao@gmail.com] Sent: Tuesday, November 01, 2011 12:01 PM To: bioconductor at r-project.org Subject: [BioC] annotate histograms Hi all, I am plot the gene expression data using histograms. I want to mark the expression of certain level of certain genes on the figure as shown in sure here<http: nar.oxfordjournals.org="" content="" 39="" suppl_1="" d1011="" f1.expansi="" on.html="">. Does anybody know how to add the red markers under bars. Thank you in advance. Wendy [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor at r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENT
0
Entering edit mode
It's simpler to use the "rug" function.... On 11/1/2011 11:11 AM, Janet L Smith wrote: > Set the y-axis on your histogram to start at a negative value, then use segments to draw the lines. > > hist (your_data, ylim=c(-10,100)) > segments (15,-0, 15, -20, col="red") > > > Janet Smith > Research Scientist > Department of Biology > MIT > Building 68-540D > Cambridge, MA 02139 > ________________________________________ > From: bioconductor-bounces at r-project.org [bioconductor-bounces at r-project.org] On Behalf Of Wendy Qiao [wendy2.qiao at gmail.com] > Sent: Tuesday, November 01, 2011 12:01 PM > To: bioconductor at r-project.org > Subject: [BioC] annotate histograms > > Hi all, > > I am plot the gene expression data using histograms. I want to mark the > expression of certain level of certain genes on the figure as shown in sure > here<http: nar.oxfordjournals.org="" content="" 39="" suppl_1="" d1011="" f1.expan="" sion.html="">. > Does anybody know how to add the red markers under bars. > > Thank you in advance. > > Wendy > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD REPLY

Login before adding your answer.

Traffic: 551 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6