Hi all, How do I make a custom BSGenome package for a given genome and SNPlocs package for it ? I appreciate any pointers. Thanks, Regards, kmo [[alternative HTML version deleted]]

Hi kmo, For the BSgenome, you can follow the "How to forge a BSgenome data package" document, http://bioconductor.org/packages/2.10/bioc/html/BSgenome.html I'm not sure what you mean by "a SNPlocs package for it". The SNPlocs packages are all Homo sapiens and created from each dbSNP build. They can be found here, http://www.bioconductor.org/packages/release/data/annotation/ Are you asking about creating a snp annotation package for a different organism? Valerie On 11/26/11 11:03, km wrote: > Hi all, > How do I make a custom BSGenome package for a given genome and SNPlocs > package for it ? > I appreciate any pointers. > Thanks, > Regards, > kmo > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor