Hi, I cannot install any bioconductor packages right now - sorry but can someone tell me what is wrong? Please see below. Thanks, Ina > source("http://bioconductor.org/biocLite.R") > biocLite("limma") Using R version 2.14.0, biocinstall version 2.8.4. Installing Bioconductor version 2.8 packages: [1] "limma" Please wait... Warning: unable to access index for repository http://bioconductor.org/packages/2.8/bioc/bin/windows/contrib/2.14 Warning: unable to access index for repository http://bioconductor.org /packages/2.8/data/annotation/bin/windows/contrib/2.14 Warning: unable to access index for repository http://bioconductor.org /packages/2.8/data/experiment/bin/windows/contrib/2.14 Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.14 Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ?limma? is not available (for R version 2.14.0) R version 2.14.0 (2011-10-31) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.2.1 loaded via a namespace (and not attached): [1] tools_2.14.0

Most likely you have saved versions of biocLite in your workspace. Remove those and re-do. Kasper On Mon, Nov 28, 2011 at 4:02 PM, Ina Hoeschele <inah at="" vbi.vt.edu=""> wrote: > Hi, > ?I cannot install any bioconductor packages right now - sorry but can someone tell me what is wrong? Please see below. > Thanks, Ina > >> source("http://bioconductor.org/biocLite.R") >> biocLite("limma") > Using R version 2.14.0, biocinstall version 2.8.4. > Installing Bioconductor version 2.8 packages: > [1] "limma" > Please wait... > > Warning: unable to access index for repository http://bioconductor.org/packages/2.8/bioc/bin/windows/contrib/2.14 > Warning: unable to access index for repository http://bioconductor.o rg/packages/2.8/data/annotation/bin/windows/contrib/2.14 > Warning: unable to access index for repository http://bioconductor.o rg/packages/2.8/data/experiment/bin/windows/contrib/2.14 > Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.14 > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > ?package ?limma? is not available (for R version 2.14.0) > > R version 2.14.0 (2011-10-31) > Platform: i386-pc-mingw32/i386 (32-bit) > > locale: > [1] LC_COLLATE=English_United States.1252 > [2] LC_CTYPE=English_United States.1252 > [3] LC_MONETARY=English_United States.1252 > [4] LC_NUMERIC=C > [5] LC_TIME=English_United States.1252 > > attached base packages: > [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base > > other attached packages: > [1] BiocInstaller_1.2.1 > > loaded via a namespace (and not attached): > [1] tools_2.14.0 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor