Sebastian, My experience is exactly the same as yours. I am trying to learn how to get newer ensembl marts made available via the R biomaRt interface. Thanks for your confirmation of the issue. ~Malcolm > -----Original Message----- > From: thieme.sebastian at googlemail.com > [mailto:thieme.sebastian at googlemail.com] On Behalf Of Sebastian Thieme > Sent: Thursday, December 22, 2011 12:50 PM > To: Cook, Malcolm > Cc: bioconductor at r-project.org; steffen at stat.berkeley.edu; > huber at ebi.ac.uk > Subject: Re: [BioC] biomaRt access to ensemble genomes 11 fungi_mart_11 > > Hi Malcolm, > > I have a older version of biomaRt 2.6.0 but I think it doesn't matter. > If you make > > library("biomaRt") > listMarts() > > you get all available marts if your mart is not listed it is not > available right now. In my version is only fungi_mart_10 ( ENSEMBL > FUNGI VARIATION 10 (EBI UK)) available. > > fungi_mart <- useMart("fungi_mart_10") > > I hope this helps a little bit. > > Best > > Basti > > 2011/12/22 Cook, Malcolm <mec at="" stowers.org="">: > > I dont see > > > > ?fungi_mart_11 ?ftp://ftp.ensemblgenomes.org/pub/current/current/fungi > /mysql/fungi_mart_11 > > > > available when I listMarts > > > > Can anyone advise what I need to do to access either or both these > ensembl genomes marts? > > > > Thanks! > > > > Malcolm Cook > > Computational Biology - Stowers Institute for Medical Research > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor