Hi, Thanks for suggestions. Its working now. Regards, Chintan Vora Sr. Research Associate Xcelris Labs Ltd. Old Premchandnagar Road, Bodakdev, Ahmedabad-380 054 India. Tel: +91-79-66197777/66311114 Fax: +91-79-66309341 Email: chintan.vora@xcelrislabs.com Website: www.xcelrisgenomics.com On 01/25/2012 10:55 AM, Dan Tenenbaum wrote: > On Tue, Jan 24, 2012 at 8:35 PM, Chintan Vora - Xcelris > <chintan.vora@xcelrislabs.com> wrote: >> I tried it but its gives me following error >> >>> library(tcltk) >> Error : .onLoad failed in loadNamespace() for 'tcltk', details: >> call: fun(libname, pkgname) >> error: Tcl/Tk support is not available on this system >> In addition: Warning message: >> S3 methods ‘$.tclvar’, ‘$<-.tclvar’, ‘as.character.tclObj’, >> ‘as.character.tclVar’, ‘as.double.tclObj’, ‘as.integer.tclObj’, >> ‘as.logical.tclObj’, ‘as.raw.tclObj’, ‘print.tclObj’, ‘[[.tclArray’, >> ‘[[<-.tclArray’, ‘$.tclArray’, ‘$<-.tclArray’, ‘names.tclArray’, >> ‘names<-.tclArray’, ‘length.tclArray’, ‘length<-.tclArray’, ‘tclObj.tclVar’, >> ‘tclObj<-.tclVar’, ‘tclvalue.default’, ‘tclvalue.tclObj’, ‘tclvalue.tclVar’, >> ‘tclvalue<-.default’, ‘tclvalue<-.tclVar’, ‘close.tkProgressBar’ were >> declared in NAMESPACE but not found >> Error: package/namespace load failed for ‘tcltk’ >> > You need to make sure you have the appropriate packages installed on > your system. > > You don't specify which Linux distribution you are running, but here > is the list of packages for ubuntu (install with "sudo apt-get install > packageName") courtesy of Hervé Pagès. I should probably make this a > FAQ. Then reinstall R. > > Required stuff: > make > libc6-dev > gfortran > gfortran-4.2 > g++ > g++-4.2 > libreadline5-dev > libx11-dev > libxt-dev > > Other highly recommended stuff (TeX/LaTeX, tcltk, PNG, JPEG, cairo, Java): > texlive-full > tcl8.5-dev > tk8.5-dev > libxss-dev > libpng12-dev > libjpeg62-dev > libcairo2-dev > gcj > gcj-4.2 > > Required by some CRAN or Bioconductor packages: > libcurl4-openssl-dev (for RCurl) > libxml2-dev (for XML) > libgtk2.0-dev, libglade2.0-dev (for RGtk2) > libgraphviz-dev (for Rgraphviz) > ggobi (for rggobi) > > Really nice to have: > manpages-dev > colorgcc (to activate this: cd /usr/local/bin/&& sudo ln -s > /usr/bin/colorgcc gcc) > > Dan > > >>> sessionInfo() >> R version 2.14.1 (2011-12-22) >> Platform: x86_64-unknown-linux-gnu (64-bit) >> >> locale: >> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C >> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 >> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 >> [7] LC_PAPER=C LC_NAME=C >> [9] LC_ADDRESS=C LC_TELEPHONE=C >> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> Regards, >> Chintan Vora >> Sr. Research Associate >> Xcelris Labs Ltd. >> Old Premchandnagar Road, >> Bodakdev, Ahmedabad-380 054 India. >> Tel: +91-79-66197777/66311114 >> Fax: +91-79-66309341 >> Email: chintan.vora@xcelrislabs.com >> Website: www.xcelrisgenomics.com >> >> >> On 01/23/2012 09:48 PM, Dan Tenenbaum wrote: >> >> On Mon, Jan 23, 2012 at 3:35 AM, Chintan Vora - Xcelris >> <chintan.vora@xcelrislabs.com> wrote: >> >> Hi, >> >> I am trying to install tcltk package for affylmGUI. But I am getting error >> >> > library(BiocInstaller) >> BiocInstaller version 1.2.1, ?biocLite for help >> > biocLite("tcltk") >> BioC_mirror: 'http://www.bioconductor.org' >> Using R version 2.14, BiocInstaller version 1.2.1. >> Installing package(s) 'tcltk' >> Warning message: >> In getDependencies(pkgs, dependencies, available, lib) : >> package 'tcltk' is not available (for R version 2.14.1) >> >> > sessionInfo() >> R version 2.14.1 (2011-12-22) >> Platform: x86_64-unknown-linux-gnu (64-bit) >> >> locale: >> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C >> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 >> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 >> [7] LC_PAPER=C LC_NAME=C >> [9] LC_ADDRESS=C LC_TELEPHONE=C >> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> other attached packages: >> [1] BiocInstaller_1.2.1 >> >> loaded via a namespace (and not attached): >> [1] tools_2.14.1 >> >> tcltk is a built-in package, included with R. >> You should not need to install it like this; >> library(tcltk) >> should just work. >> Dan >> >> >> -- >> >> Regards, >> Chintan Vora >> Sr. Research Associate >> Xcelris Labs Ltd. >> Old Premchandnagar Road, >> Bodakdev, Ahmedabad-380 054 India. >> Tel: +91-79-66197777/66311114 >> Fax: +91-79-66309341 >> Email: chintan.vora@xcelrislabs.com >> Website: www.xcelrisgenomics.com >> >> >> >> "Please don't print this e-mail unless you really need to. 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