Hi, Thanks for your previous replies about problems I've been having installing Bioconductor when using OpenSUSE 11.4 and R 2.14 I've solved the problem about the C compiler, which has now installed fine. However, I get the following error messages now: * installing *source* package ?RSQLite? ... ** package ?RSQLite? successfully unpacked and MD5 sums checked /usr/lib64/R/bin/config: line 142: make: command not found /usr/lib64/R/bin/config: line 143: make: command not found /usr/lib64/R/bin/config: line 219: make: command not found /usr/lib64/R/bin/config: line 142: make: command not found /usr/lib64/R/bin/config: line 143: make: command not found /usr/lib64/R/bin/config: line 219: make: command not found checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking for library containing fdatasync... none required configure: creating ./config.status config.status: creating src/Makevars ** libs sh: make: command not found ERROR: compilation failed for package ?RSQLite? * removing ?/usr/lib64/R/library/RSQLite? * installing *source* package ?Biobase? ... ** libs sh: make: command not found ERROR: compilation failed for package ?Biobase? * removing ?/usr/lib64/R/library/Biobase? * installing *source* package ?IRanges? ... ** libs sh: make: command not found ERROR: compilation failed for package ?IRanges? * removing ?/usr/lib64/R/library/IRanges? ERROR: dependencies ?Biobase?, ?RSQLite?, ?IRanges? are not available for package ?AnnotationDbi? * removing ?/usr/lib64/R/library/AnnotationDbi? any help would be very much appreciated! Tom Bartlett

On Wed, Jan 25, 2012 at 9:42 AM, Bartlett, Thomas <thomas.bartlett.10 at="" ucl.ac.uk=""> wrote: > Hi, > > Thanks for your previous replies about problems I've been having installing Bioconductor when using OpenSUSE 11.4 and R 2.14 I've solved the problem about the C compiler, which has now installed fine. However, I get the following error messages now: > > * installing *source* package ?RSQLite? ... > ** package ?RSQLite? successfully unpacked and MD5 sums checked > /usr/lib64/R/bin/config: line 142: make: command not found > /usr/lib64/R/bin/config: line 143: make: command not found > /usr/lib64/R/bin/config: line 219: make: command not found > /usr/lib64/R/bin/config: line 142: make: command not found > /usr/lib64/R/bin/config: line 143: make: command not found > /usr/lib64/R/bin/config: line 219: make: command not found > checking for gcc... gcc > checking for C compiler default output file name... a.out > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking how to run the C preprocessor... gcc -E > checking for gcc... (cached) gcc > checking whether we are using the GNU C compiler... (cached) yes > checking whether gcc accepts -g... (cached) yes > checking for gcc option to accept ISO C89... (cached) none needed > checking for library containing fdatasync... none required > configure: creating ./config.status > config.status: creating src/Makevars > ** libs > sh: make: command not found > ERROR: compilation failed for package ?RSQLite? > * removing ?/usr/lib64/R/library/RSQLite? > * installing *source* package ?Biobase? ... > ** libs > sh: make: command not found > ERROR: compilation failed for package ?Biobase? > * removing ?/usr/lib64/R/library/Biobase? > * installing *source* package ?IRanges? ... > ** libs > sh: make: command not found > ERROR: compilation failed for package ?IRanges? > * removing ?/usr/lib64/R/library/IRanges? > ERROR: dependencies ?Biobase?, ?RSQLite?, ?IRanges? are not available for package ?AnnotationDbi? > * removing ?/usr/lib64/R/library/AnnotationDbi? > Use sudo rpm -q make to find out what package "make" is in. Then use sudo zypper install PKGNAME where PKGNAME is the package name from the previous step. Dan > > any help would be very much appreciated! > > Tom Bartlett > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor