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khadeeja ismail
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@khadeeja-ismail-4711
Last seen 8.2 years ago
Hi,
Wondering if anyone else has come across this error or knows the cause
of it.
"Error in if (mm < 0.01) { : missing value where TRUE/FALSE needed"
Encountered it while trying to read 450k raw data output from
GenomeStudio using the lumiMethyR function. The file
size is 3.8GB and it has data from 60 arrays. R processed it for quite
some time before it stopped, giving the error message.
Thanking you in advance,
Khadeeja
> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods
base
other attached packages:
[1] lumi_2.4.0 nleqslv_1.8.5 Biobase_2.12.1
loaded via a namespace (and not attached):
[1] affy_1.30.0 affyio_1.20.0 annotate_1.30.0
[4] AnnotationDbi_1.14.1 DBI_0.2-5 grid_2.13.0
[7] hdrcde_2.15 KernSmooth_2.23-4 lattice_0.19-23
[10] MASS_7.3-12 Matrix_0.999375-50 methylumi_1.8.0
[13] mgcv_1.7-5 nlme_3.1-100
preprocessCore_1.14.0
[16] RSQLite_0.9-4 xtable_1.5-6
>
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