Now fixed in devel version 1.7.42. Valerie On 03/27/2012 08:59 AM, Valerie Obenchain wrote: > Hi Paul, > > Thanks for the bug report. I'll look into it. > > Valerie > > On 03/27/2012 08:20 AM, Paul Theodor Pyl wrote: >> Hi, >> >> I encountered (during a call to VariantAnnotation::locateVariants) an >> error that originated from GenomicRanges::.breakTie. From the source >> code of that function (svn revision 64480) it looks like equivalue >> can only ever have a length of 1 while equidist can be longer which >> breaks the call to DataFrame because the column lengths do not match. >> >> Error in DataFrame(idx = c(mindist, eqidist), value = c(minvalue, >> eqivalue)) : >> different row counts implied by arguments >> >> Enter a frame number, or 0 to exit >> 1: locateVariants(insertions_granges, txdb19) >> 2: locateVariants(insertions_granges, txdb19) >> 3: .locateVariants(query, subject, ...) >> 4: .intergenic(txCO, query, cache, map) >> 5: follow(query, rng) >> 6: follow(query, rng) >> 7: .local(x, subject, ...) >> 8: .findRanges(x, subject, ignore.strand, type = "follow", ...) >> 9: .breakTie(sub1, res1, k1, dist1, sub2, res2, k2, dist2, type) >> 10: DataFrame(idx = c(mindist, eqidist), value = c(minvalue, eqivalue)) >> >> Kind Regards, >> Paul >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor