Hi all, When I run the BASH command from the bead array package with my data or the example data from the beadarray package I get the following error (code for the example data): R> library("beadarray") R> library("beadarrayExampleData") R> data(exampleBLData) R> output <- BASH(exampleBLData,array=1:2,useLocs=FALSE) Error in BASH(exampleBLData, array = 1:2, useLocs = FALSE) : BASH can be applied to only one array at a time Does anyone have an idea what is wrong? Thank you! Kemal -- output of sessionInfo(): R> sessionInfo() R version 2.15.0 alpha (2012-03-08 r58645) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] beadarrayExampleData_1.0.3 BiocInstaller_1.3.9 [3] beadarray_2.5.9 ggplot2_0.9.0 [5] Biobase_2.15.4 BiocGenerics_0.1.14 loaded via a namespace (and not attached): [1] AnnotationDbi_1.17.27 BeadDataPackR_1.7.1 colorspace_1.1-1 [4] DBI_0.2-5 dichromat_1.2-4 digest_0.5.1 [7] grid_2.15.0 IRanges_1.13.34 limma_3.11.19 [10] MASS_7.3-17 memoise_0.1 munsell_0.3 [13] plyr_1.7.1 proto_0.3-9.2 RColorBrewer_1.0-5 [16] reshape2_1.2.1 RSQLite_0.11.1 scales_0.2.0 [19] stats4_2.15.0 stringr_0.6 tools_2.15.0 R> -- Sent via the guest posting facility at bioconductor.org.

Hi Kemal, On Tue, Mar 27, 2012 at 11:35 AM, Kemal Akat [guest] <guest at="" bioconductor.org=""> wrote: > > Hi all, > > When I run the BASH command from the bead array package with my data or the example data from the beadarray package I get the following error (code for the example data): > > R> library("beadarray") > R> library("beadarrayExampleData") > R> data(exampleBLData) > R> output <- BASH(exampleBLData,array=1:2,useLocs=FALSE) > Error in BASH(exampleBLData, array = 1:2, useLocs = FALSE) : > ?BASH can be applied to only one array at a time > > Does anyone have an idea what is wrong? Seems like a possible error in the example. CC'ing the package maintainer here. Dan > > Thank you! > Kemal > > > > ?-- output of sessionInfo(): > > R> sessionInfo() > R version 2.15.0 alpha (2012-03-08 r58645) > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base > > other attached packages: > [1] beadarrayExampleData_1.0.3 BiocInstaller_1.3.9 > [3] beadarray_2.5.9 ? ? ? ? ? ?ggplot2_0.9.0 > [5] Biobase_2.15.4 ? ? ? ? ? ? BiocGenerics_0.1.14 > > loaded via a namespace (and not attached): > ?[1] AnnotationDbi_1.17.27 BeadDataPackR_1.7.1 ? colorspace_1.1-1 > ?[4] DBI_0.2-5 ? ? ? ? ? ? dichromat_1.2-4 ? ? ? digest_0.5.1 > ?[7] grid_2.15.0 ? ? ? ? ? IRanges_1.13.34 ? ? ? limma_3.11.19 > [10] MASS_7.3-17 ? ? ? ? ? memoise_0.1 ? ? ? ? ? munsell_0.3 > [13] plyr_1.7.1 ? ? ? ? ? ?proto_0.3-9.2 ? ? ? ? RColorBrewer_1.0-5 > [16] reshape2_1.2.1 ? ? ? ?RSQLite_0.11.1 ? ? ? ?scales_0.2.0 > [19] stats4_2.15.0 ? ? ? ? stringr_0.6 ? ? ? ? ? tools_2.15.0 > R> > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor