This is an automated message sent out weekly to report recent changes to Bioconductor packages. Please see the URL http://www.bioconductor.org/changelog.html for a complete history of changes. Unless otherwise noted, these changes apply to the developmental packages only. ---------------------------------------------------------------------- - 7 April 2004: limma 1.6.1. GKS - fix to printHead to treat factors as as vectors - new argument cex for vennDiagram 6 April 2004: limma 1.6.0. GKS - additional argument block to duplicateCorrelation, gls.series and lmFit to treat technical replicates as randomized blocks - new methods Rquantile, Gquantile, Tquantile for normalizeBetweenArrays() - lmFit now extracts probe IDs from exprSet object - Ecoli-lrp case study added to User's Guide - backgroundCorrect(,method="edwards") now handles NAs - bug fixes to backgroundCorrect(,method="edwards") - classifyTests() renamed to classifyTestsF() - classifyTestsP() now extracts degrees of freedom from object - read.maimages no longer disallows source= and columns= together 23 March 2004: reposTools - added support for package bundles. JG 20 March 2004: limma 1.5.8. GKS - internal links added to contents section of User's Guide - changed calling sequence in duplicateCorrelation() to randomizedBlockFit(), limma now depends on package statmod >= 1.0.6 - two changes to plotPrintTipLoess() to avoid warning messages - bug fix to duplicateCorrelation() to avoid test on rho[i] when NA

This is an automated message sent out weekly to report recent changes to Bioconductor packages. Please see the URL http://www.bioconductor.org/changelog.html for a complete history of changes. Unless otherwise noted, these changes apply to the developmental packages only. ---------------------------------------------------------------------- - 14 April 2004: graph BCE - added setAs("graphNEL","matrix") to complement existing setAs("matrix","graphNEL")

This is an automated message sent out weekly to report recent changes to Bioconductor packages. Please see the URL http://www.bioconductor.org/changelog.html for a complete history of changes. Unless otherwise noted, these changes apply to the developmental packages only. ---------------------------------------------------------------------- - 04/20/2004: tkWidgets - vignette for tkWidgets modified/omproved.JZ 04/19/2004: tkwidgets - tkgrab added to some of the widgets called by a primary widget to enable focus settings.JZ 04/21/2004: RBGL: doc completed, extractPath docd (rename of unwindPens) -- VC 04/21/2004: RMAGEML: switch on SJava version introduced in .First.lib to allow execution on windows with 0.65 (.JavaInit call sequence differs between 0.65 and 0.67) 04/21/2004: SNPtools going away; RSNPper is the replacement package