Hi Martin! I was trying to install package "SeattleIntro2011" but never succeed and got the warning message "package SeattleIntro2011 is not available for R version 2.15.0". Also I tried Bioconductor to get the source code, no luck either. I was wondering where I can get more information about this package, as it is very good starter kit for NGS analysis. However, SeattleIntro2011Data can be installed without any problem. Could you please give me any clue Thanks a lot! Yifang -- output of sessionInfo(): > sessionInfo() R version 2.15.0 (2012-03-30) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 [5] LC_MONETARY=en_CA.UTF-8 LC_MESSAGES=en_CA.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] Biostrings_2.24.0 BiocInstaller_1.4.3 [3] lattice_0.20-6 SeattleIntro2011Data_0.0.3 [5] edgeR_2.6.0 limma_3.12.0 [7] GenomicFeatures_1.8.0 AnnotationDbi_1.18.0 [9] Biobase_2.16.0 GenomicRanges_1.8.2 [11] IRanges_1.14.2 BiocGenerics_0.2.0 loaded via a namespace (and not attached): [1] biomaRt_2.12.0 bitops_1.0-4.1 BSgenome_1.24.0 DBI_0.2-5 [5] grid_2.15.0 RCurl_1.91-1 Rsamtools_1.8.0 RSQLite_0.11.1 [9] rtracklayer_1.16.0 stats4_2.15.0 tools_2.15.0 XML_3.9-4 [13] zlibbioc_1.2.0 > -- Sent via the guest posting facility at bioconductor.org.

Hi Yifang, On Wed, Apr 4, 2012 at 9:03 AM, YIfang Tan [guest] <guest at="" bioconductor.org=""> wrote: > > Hi Martin! > > I was trying to install package "SeattleIntro2011" but never succeed and got the warning message "package SeattleIntro2011 is not available for R version 2.15.0". ?Also I tried Bioconductor to get the source code, no luck either. > I was wondering where I can get more information about this package, as it is very good starter kit for NGS analysis. > > However, SeattleIntro2011Data can be installed without any problem. Could you please give me any clue > At the time this course was given, R-2.14 was current. The packages will work with R-2.14. Dan > Thanks a lot! > > Yifang > > > ?-- output of sessionInfo(): > >> sessionInfo() > R version 2.15.0 (2012-03-30) > Platform: x86_64-pc-linux-gnu (64-bit) > > locale: > ?[1] LC_CTYPE=en_CA.UTF-8 ? ? ? LC_NUMERIC=C > ?[3] LC_TIME=en_CA.UTF-8 ? ? ? ?LC_COLLATE=en_CA.UTF-8 > ?[5] LC_MONETARY=en_CA.UTF-8 ? ?LC_MESSAGES=en_CA.UTF-8 > ?[7] LC_PAPER=C ? ? ? ? ? ? ? ? LC_NAME=C > ?[9] LC_ADDRESS=C ? ? ? ? ? ? ? LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base > > other attached packages: > ?[1] Biostrings_2.24.0 ? ? ? ? ?BiocInstaller_1.4.3 > ?[3] lattice_0.20-6 ? ? ? ? ? ? SeattleIntro2011Data_0.0.3 > ?[5] edgeR_2.6.0 ? ? ? ? ? ? ? ?limma_3.12.0 > ?[7] GenomicFeatures_1.8.0 ? ? ?AnnotationDbi_1.18.0 > ?[9] Biobase_2.16.0 ? ? ? ? ? ? GenomicRanges_1.8.2 > [11] IRanges_1.14.2 ? ? ? ? ? ? BiocGenerics_0.2.0 > > loaded via a namespace (and not attached): > ?[1] biomaRt_2.12.0 ? ? bitops_1.0-4.1 ? ? BSgenome_1.24.0 ? ?DBI_0.2-5 > ?[5] grid_2.15.0 ? ? ? ?RCurl_1.91-1 ? ? ? Rsamtools_1.8.0 ? ?RSQLite_0.11.1 > ?[9] rtracklayer_1.16.0 stats4_2.15.0 ? ? ?tools_2.15.0 ? ? ? XML_3.9-4 > [13] zlibbioc_1.2.0 >> > > > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor