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Last seen 10.6 years ago
Dear List,
it seems that (at least the windows binaries) of packages
lumiHumanIDMapping version 1.8.0 and 1.10.0 miss some mapping
information. Examplarily the "QualityScore" is not availabe. However,
within the pdf manual this information is still described
Thanks for any information about that!
Holger
> require(lumiHumanIDMapping)
> conn <- lumiHumanIDMapping_dbconn()
> dbListFields(conn, 'nuID_MappingInfo')
[1] "nuID" "Accession" "EntrezID" "Symbol"
-- output of sessionInfo():
> sessionInfo()
R version 2.14.0 (2011-10-31)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252
LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] lumiHumanIDMapping_1.10.0 RSQLite_0.10.0 DBI_0.2-5
AnnotationDbi_1.16.5
[5] lumi_2.6.0 nleqslv_1.9.0
methylumi_2.0.1 Biobase_2.14.0
loaded via a namespace (and not attached):
[1] affy_1.32.0 affyio_1.22.0 annotate_1.32.0
BiocInstaller_1.2.1 grid_2.14.0
[6] hdrcde_2.15 IRanges_1.12.3 KernSmooth_2.23-6
lattice_0.20-0 MASS_7.3-16
[11] Matrix_1.0-1 mgcv_1.7-9 nlme_3.1-102
preprocessCore_1.16.0 tools_2.14.0
[16] xtable_1.6-0 zlibbioc_1.0.0
--
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