how to unlist a list of GappedAlignments objects
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Yue Li ▴ 370
@yue-li-5245
Last seen 8.9 years ago
USA
Dear R experts, I wonder if anyone knows how to unlist a list of GappedAlignments objects. Simply using unlist does not work b/c each GappedAlignments element of the list is compound. A brute-force way is to run a for loop and use 'append' to append each element to a GappedAlignments object. But this way is painfully slow. Yue
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@steve-lianoglou-2771
Last seen 21 months ago
United States
Hi, On Mon, May 7, 2012 at 7:27 PM, Yue Li <gorillayue at="" gmail.com=""> wrote: > Dear R experts, > > I wonder if anyone knows how to unlist a list of GappedAlignments objects. > > Simply using unlist does not work b/c each GappedAlignments element of the list is compound. > > A brute-force way is to run a for loop and use 'append' to append each element to a GappedAlignments object. But this way is painfully slow. Does something like this work?: R> unlisted <- do.call(c, your.gapped.alignment.list) -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology ?| Memorial Sloan-Kettering Cancer Center ?| Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact
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Hi Steve, That works wonderfully! Thank you so much! Yue On 2012-05-07, at 9:21 PM, Steve Lianoglou wrote: > Hi, > > On Mon, May 7, 2012 at 7:27 PM, Yue Li <gorillayue at="" gmail.com=""> wrote: >> Dear R experts, >> >> I wonder if anyone knows how to unlist a list of GappedAlignments objects. >> >> Simply using unlist does not work b/c each GappedAlignments element of the list is compound. >> >> A brute-force way is to run a for loop and use 'append' to append each element to a GappedAlignments object. But this way is painfully slow. > > Does something like this work?: > > R> unlisted <- do.call(c, your.gapped.alignment.list) > > -steve > > -- > Steve Lianoglou > Graduate Student: Computational Systems Biology > | Memorial Sloan-Kettering Cancer Center > | Weill Medical College of Cornell University > Contact Info: http://cbio.mskcc.org/~lianos/contact
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