Dear Cei, Thanks for pointing out the changed behaviour of openVignette(). You're not missing anything obvious I think. In R for Windows, there's a drop-down menu item for the edgeR User's Guide. In Unix or Mac, however, the easiest way is following the html package help starting from help.start(), and that requires quite a few clicks to get to it. So I've just now committed through a new function edgeRUsersGuide() to the release version of edgeR, which will work just like the corresponding function in limma. If you wait a day or two for Biconductor to rebuild the package, you get the new function when you reinstall edgeR. Best wishes Gordon > Date: Mon, 21 May 2012 23:39:46 -0500 > From: Cei Abreu-Goodger <cei at="" langebio.cinvestav.mx=""> > To: bioconductor at r-project.org > Subject: [BioC] How to open the edgeR Users Guide within R? > > Dear all, > > In previous versions of R/BioC I was able to access the edgeR Users > Guide from within R using the openVignette() function. Now this points > to a brief vignette which only says that you see the edgeR User's Guide, > but unlike the limmaUsersGuide() convenience function, edgeR doesn't > provide one. I can copy this function and edit it of course, but I > wanted to ask if I missing something obvious? It was nice to be able to > quickly consult the Users Guide from within any R session. > > sessionInfo() > R version 2.15.0 (2012-03-30) > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > > locale: > [1] C/UTF-8/C/C/C/C > > attached base packages: > [1] grDevices datasets stats graphics utils methods base > > other attached packages: > [1] edgeR_2.6.3 limma_3.12.0 Biobase_2.16.0 > BiocGenerics_0.2.0 BiocInstaller_1.4.4 > > Cheers, > > Cei > > -- > Dr. Cei Abreu-Goodger > Langebio CINVESTAV > Tel: (52) 462 166 3006 > cei at langebio.cinvestav.mx > > -- ______________________________________________________________________ The information in this email is confidential and intend...{{dropped:4}}