useDevel() not working

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Michael Muratet ▴ 420

@michael-muratet-3076

Last seen 10.2 years ago

Greetings I have installed R 2.15 with the intent of installing the devel version of BioC. Following the instructions on http://bioconductor.org/developers/useDevel/ , I get > library(BiocInstaller) > useDevel() Error: could not find function "useDevel" What version of BiocInstaller is required? Thanks Mike > sessionInfo() R version 2.15.0 (2012-03-30) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.2.1 loaded via a namespace (and not attached): [1] tools_2.15.0 Michael Muratet, Ph.D. Senior Scientist HudsonAlpha Institute for Biotechnology mmuratet at hudsonalpha.org (256) 327-0473 (p) (256) 327-0966 (f) Room 4005 601 Genome Way Huntsville, Alabama 35806

BiocInstaller BiocInstaller • 1.5k views

ADD COMMENT • link updated 12.5 years ago by Sean Davis 21k • written 12.5 years ago by Michael Muratet ▴ 420

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Sean Davis 21k

@sean-davis-490

Last seen 3 months ago

United States

On Tue, May 29, 2012 at 2:50 PM, Michael Muratet <mmuratet at="" hudsonalpha.org=""> wrote: > Greetings > > I have installed R 2.15 with the intent of installing the devel version of > BioC. Following the instructions on > http://bioconductor.org/developers/useDevel/, I get > >> library(BiocInstaller) >> useDevel() > Error: could not find function "useDevel" > > What version of BiocInstaller is required? source('http://bioconductor.org/biocLite.R') Then: help(useDevel) Hope that helps. Sean

ADD COMMENT • link 12.5 years ago Sean Davis 21k

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On May 29, 2012, at 1:52 PM, Sean Davis wrote: > On Tue, May 29, 2012 at 2:50 PM, Michael Muratet > <mmuratet at="" hudsonalpha.org=""> wrote: >> Greetings >> >> I have installed R 2.15 with the intent of installing the devel >> version of >> BioC. Following the instructions on >> http://bioconductor.org/developers/useDevel/, I get >> >>> library(BiocInstaller) >>> useDevel() >> Error: could not find function "useDevel" >> >> What version of BiocInstaller is required? > > source('http://bioconductor.org/biocLite.R') > > Then: > > help(useDevel) > > Hope that helps. Hi Sean That does not work by itself, but I took the next logical step and ran biocLite(). Now useDevel is defined. Now I can redefine R_LIBS_USER and install the devel version into a separate directory. Thanks Mike > > Sean Michael Muratet, Ph.D. Senior Scientist HudsonAlpha Institute for Biotechnology mmuratet at hudsonalpha.org (256) 327-0473 (p) (256) 327-0966 (f) Room 4005 601 Genome Way Huntsville, Alabama 35806

ADD REPLY • link 12.5 years ago Michael Muratet ▴ 420

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On Tue, May 29, 2012 at 4:57 PM, Michael Muratet <mmuratet at="" hudsonalpha.org=""> wrote: > > On May 29, 2012, at 1:52 PM, Sean Davis wrote: > >> On Tue, May 29, 2012 at 2:50 PM, Michael Muratet >> <mmuratet at="" hudsonalpha.org=""> wrote: >>> >>> Greetings >>> >>> I have installed R 2.15 with the intent of installing the devel version >>> of >>> BioC. Following the instructions on >>> http://bioconductor.org/developers/useDevel/, I get >>> >>>> library(BiocInstaller) >>>> useDevel() >>> >>> Error: could not find function "useDevel" >>> >>> What version of BiocInstaller is required? >> >> >> source('http://bioconductor.org/biocLite.R') >> >> Then: >> >> help(useDevel) >> >> Hope that helps. > > Hi Sean > > That does not work by itself, but I took the next logical step and ran > biocLite(). Sorry about that. Glad it worked out for you. > Now useDevel is defined. Now I can redefine R_LIBS_USER and > install the devel version into a separate directory. > > Thanks > > Mike > >> >> Sean > > > Michael Muratet, Ph.D. > Senior Scientist > HudsonAlpha Institute for Biotechnology > mmuratet at hudsonalpha.org > (256) 327-0473?(p) > (256) 327-0966?(f) > > Room 4005 > 601 Genome Way > Huntsville, Alabama 35806 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor

ADD REPLY • link 12.5 years ago Sean Davis 21k

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