When running this program I have the error message below. I was thinking there was something I should update but could not find any updates. -- output of sessionInfo(): > annotatedPeak=annotatePeakInBatch(KLLNChIP, AnnotationData = TSS.human.GRCh37, output="both", select=NULL, maxgap = 0) Warning message: 'matchMatrix' is deprecated. Use 'as.matrix' instead. -- Sent via the guest posting facility at bioconductor.org.

Emily, You can ignore the warning message and proceed. If you wish, you could try BioC Devel Version at http://www.bioconductor.org/developers/useDevel/. Best regards, Julie On 6/8/12 1:07 PM, "Emily P [guest]" <guest at="" bioconductor.org=""> wrote: > > When running this program I have the error message below. > I was thinking there was something I should update but could not find any > updates. > > -- output of sessionInfo(): > >> annotatedPeak=annotatePeakInBatch(KLLNChIP, AnnotationData = >> TSS.human.GRCh37, output="both", select=NULL, maxgap = 0) > Warning message: > 'matchMatrix' is deprecated. > Use 'as.matrix' instead. > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor