Names of the samples (CEL file)
1
0
Entering edit mode
@vitalina-komashko-750
Last seen 10.3 years ago
Hello! I read my CEL files using: >data.test<-ReadAffy(widget=TRUE) So I would like to look at the first sample name of my data: >sampleNames(data.test[1]) [1] "C:/Program Files/R/rw1090/rdata/JS1999081101AA.CEL" Why are the sample names displayed as a path to the corresponding file? How could I change it? Thank you very much! Vitalina. [[alternative HTML version deleted]]
• 967 views
ADD COMMENT
0
Entering edit mode
@adaikalavan-ramasamy-675
Last seen 10.3 years ago
unwanted <- "C:/Program Files/R/rw1090/rdata/" colnames(data.test) <- gsub(unwanted, "", colnames(data.test)) On Thu, 2004-05-06 at 15:58, Vitalina Komashko wrote: > Hello! > I read my CEL files using: > >data.test<-ReadAffy(widget=TRUE) > So I would like to look at the first sample name of my data: > >sampleNames(data.test[1]) > [1] "C:/Program Files/R/rw1090/rdata/JS1999081101AA.CEL" > Why are the sample names displayed as a path to the corresponding file? How could I change it? > Thank you very much! > Vitalina. > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor >
ADD COMMENT
0
Entering edit mode
look at ?ReadAffy you will see a sampleName argument. you can specify whatever you want when you read. On Thu, 6 May 2004, Adaikalavan Ramasamy wrote: > unwanted <- "C:/Program Files/R/rw1090/rdata/" > colnames(data.test) <- gsub(unwanted, "", colnames(data.test)) > > On Thu, 2004-05-06 at 15:58, Vitalina Komashko wrote: > > Hello! > > I read my CEL files using: > > >data.test<-ReadAffy(widget=TRUE) > > So I would like to look at the first sample name of my data: > > >sampleNames(data.test[1]) > > [1] "C:/Program Files/R/rw1090/rdata/JS1999081101AA.CEL" > > Why are the sample names displayed as a path to the corresponding file? How could I change it? > > Thank you very much! > > Vitalina. > > > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor >
ADD REPLY

Login before adding your answer.

Traffic: 768 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6