Hi, We have exported the rma values of our genes from affylmGUI and compared them to those from running rma in affy (eset <- rma(Data) )and they appear to be slightly different. Do the two programs do the same thing? thanks, Simon

At 5:22pm -0400 13/5/04, Simon Kidd wrote: >Hi, > >We have exported the rma values of our genes from affylmGUI and >compared them to those from running rma in affy (eset <- rma(Data) >)and they appear to be slightly different. Do the two programs do >the same thing? I think I know why, there were CEL files in the directory which were not in the contrasts file. sorry Simon