I run R 1.9.0 on windows 2000, and have the following libraries installed: affydata_1.3.1 affy_1.4.23 Biobase_1.4.10 DynDoc_1.3.14 gcrma_1.0.6 hgu133acdf_1.4.3 hgu95av2cdf_1.4.3 hgu95av2probe_1.0 matchprobes_1.0.7 moe430acdf_1.4.3 multcomp_0.4-6 mvtnorm_0.6-6 rae230acdf_1.4.3 reposTools_1.3.29 rgu34acdf_1.4.3 tkWidgets_1.5.1 widgetTools_1.2.7 1. The rma function (in affy library) always crashes. 2. When executing the sample code in gcrma function's document, the following error occures: Loading required package: matchprobes Error in f(libname, pkgname) : couldn't find function "addVigs2WinMenu" Does any one known any quick fix or workaround? James [[alternative HTML version deleted]]

Could you please try updating your packages. The current version of the affy package is 1.4.29 and other packages may also be out of date. Thanks, Ben On Fri, 2004-05-14 at 06:57, Li, James [PRDUS Non-J&J] wrote: > I run R 1.9.0 on windows 2000, and have the following libraries installed: > > affydata_1.3.1 > affy_1.4.23 > Biobase_1.4.10 > DynDoc_1.3.14 > gcrma_1.0.6 > hgu133acdf_1.4.3 > hgu95av2cdf_1.4.3 > hgu95av2probe_1.0 > matchprobes_1.0.7 > moe430acdf_1.4.3 > multcomp_0.4-6 > mvtnorm_0.6-6 > rae230acdf_1.4.3 > reposTools_1.3.29 > rgu34acdf_1.4.3 > tkWidgets_1.5.1 > widgetTools_1.2.7 > > 1. The rma function (in affy library) always crashes. > 2. When executing the sample code in gcrma function's document, the > following error occures: > Loading required package: matchprobes > Error in f(libname, pkgname) : couldn't find function > "addVigs2WinMenu" > > Does any one known any quick fix or workaround? > > James > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor -- Ben Bolstad <bolstad@stat.berkeley.edu> http://www.stat.berkeley.edu/~bolstad