On Mon, Aug 13, 2012 at 3:12 PM, Sean Davis <sdavis2 at="" mail.nih.gov=""> wrote: > On Mon, Aug 13, 2012 at 6:09 PM, joseph <jdsandjd at="" yahoo.com=""> wrote: > >> Hi >> I installed R-devel-leopard.pkg (56Mb, installer incl. GUI) from >> http://r.research.att.com/ on my Mac. >> I installed core Bioconductor packages with: >> >> source("http://bioconductor.org/biocLite.R") >> >> biocLite() >> I got the following error when I tried to load Biobase: >> Please help me to solve this issue. >> >> >> Loading required package: BiocGenerics >> Attaching package: ?BiocGenerics? >> The following object(s) are masked from ?package:stats?: >> xtabs >> The following object(s) are masked from ?package:base?: >> anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, get, >> intersect, >> lapply, Map, mapply, mget, order, paste, pmax, pmax.int, pmin, pmin.int, >> Position, rbind, Reduce, >> rep.int, rownames, sapply, setdiff, table, tapply, union, unique >> Error in dyn.load(file, DLLpath = DLLpath, ...) : >> unable to load shared object >> '/Library/Frameworks/R.framework/Versions/2.16/Resources/library/Bi obase/libs/x86_64/Biobase.so': >> >> >> >> dlopen(/Library/Frameworks/R.framework/Versions/2.16/Resources/libr ary/Biobase/libs/x86_64/Biobase.so, >> 6): Library not loaded: >> /Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libR.dylib >> Referenced from: >> /Library/Frameworks/R.framework/Versions/2.16/Resources/library/Bio base/libs/x86_64/Biobase.so >> Reason: image not found >> Error: package/namespace load failed for ?Biobase? >> starting httpd help server ... done >> > > >> >> >> > sessionInfo() >> R Under development (unstable) (2012-08-11 >> r60235) >> > > Hi, Joseph. > > Bioconductor currently works with R-2.15 and not R-devel for both the > development and release versions of bioconductor. Give the latest R-2.15 a > try and let us know if you still have problems. > If you want to use the devel version of Bioconductor (2.11), do the following after installing R-2.15: source("http://bioconductor.org/biocLite.R") useDevel() Otherwise biocLite() will install packages for the release version of Bioconductor (2.10). Dan > Sean > > > >> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >> locale: >> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> other attached packages: >> [1] BiocGenerics_0.3.1 >> >> loaded via a namespace (and not attached): >> [1] tools_2.16.0 >> > >> [[alternative HTML version deleted]] >> >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor