Hi Jim, Thanks for your reply. Yes, I did notice that and I tried to change it but it had no effect. I'll try again - maybe I did something wrong. Cheers, Frank On 13/09/12 18:34, James W. MacDonald wrote: > Hi Frank, > > > > On 9/13/2012 4:29 AM, Frank Schwach [guest] wrote: >> Hi, >> >> does anybody know if there is any way in the topGO package to force >> full-length descriptions of the GO terms to be printed in the graph? >> By default, only about 20 characters of the descriptions are printed. > > If you look at the help page for showSigOfNodes(), there is an > argument .NO.CHAR that is listed as an internal function. This > controls the number of characters that are shown in the graph, and > defaults to 20. > > You can bump that up to whatever value you see fit, but note that it > *is* listed as an internal function, so you are stepping into the deep > end of the pool - if things don't work the way you want, it will > likely be up to you to figure out why and fix it. > > Best, > > Jim > > >> >> Thanks for your help! >> >> Frank >> >> >> -- output of sessionInfo(): >> >> R version 2.11.1 (2010-05-31) >> x86_64-unknown-linux-gnu >> >> locale: >> [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C >> [3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8 >> [5] LC_MONETARY=C LC_MESSAGES=C >> [7] LC_PAPER=en_GB.UTF-8 LC_NAME=C >> [9] LC_ADDRESS=C LC_TELEPHONE=C >> [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> other attached packages: >> [1] topGO_1.16.2 SparseM_0.85 GO.db_2.4.1 >> [4] RSQLite_0.9-1 DBI_0.2-5 AnnotationDbi_1.10.1 >> [7] Biobase_2.8.0 graph_1.26.0 >> >> loaded via a namespace (and not attached): >> [1] grid_2.11.1 lattice_0.18-8 tools_2.11.1 >> >> >> -- >> Sent via the guest posting facility at bioconductor.org. >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.