i killed the vius on my computer and then cannot load DESeq > library(DESeq) Loading required package: locfit Error in get(Info[i, 1], envir = env) : internal error -3 in R_decompress1 Error: package ?locfit? could not be loaded then i stalled > library(locfit) Error in get(Info[i, 1], envir = env) : internal error -3 in R_decompress1 Error: package/namespace load failed for ?locfit? R version 2.15.1 (2012-06-22) Platform: x86_64-pc-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936 [2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936 [3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936 [4] LC_NUMERIC=C [5] LC_TIME=Chinese (Simplified)_People's Republic of China.936 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.4.7 Biobase_2.16.0 BiocGenerics_0.2.0 loaded via a namespace (and not attached): [1] grid_2.15.1 tools_2.15.1 -- shan gao Room 231(Dr.Fei lab) Boyce Thompson Institute Cornell University Tower Road, Ithaca, NY 14853-1801 Office phone: 1-607-254-1267(day) Official email:sg839 at cornell.edu Facebook:http://www.facebook.com/profile.php?id=100001986532253

On Fri, Sep 14, 2012 at 4:22 PM, wang peter <wng.peter at="" gmail.com=""> wrote: > i killed the vius on my computer and then cannot load DESeq Or, perhaps, the virus killed your computer ... It seems you have a lot of blow out from your virus (I recall you posted a problem w/ edgeR yesterday). This is what I might try to do -- not necessarily in this order: (1) Start R in terminal via: R --vanilla (2) Perhaps blow out your R install and reinstall it all (doing the same w/ your packages) (3) Go nuclear and install linux instead of windows and start the process of putting the pieces of your life back together in a more permanent fashion. HTH, -steve > >> library(DESeq) > Loading required package: locfit > Error in get(Info[i, 1], envir = env) : > internal error -3 in R_decompress1 > Error: package ?locfit? could not be loaded > > then i stalled >> library(locfit) > Error in get(Info[i, 1], envir = env) : > internal error -3 in R_decompress1 > Error: package/namespace load failed for ?locfit? > > > R version 2.15.1 (2012-06-22) > Platform: x86_64-pc-mingw32/x64 (64-bit) > > locale: > [1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936 > [2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936 > [3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936 > [4] LC_NUMERIC=C > [5] LC_TIME=Chinese (Simplified)_People's Republic of China.936 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] BiocInstaller_1.4.7 Biobase_2.16.0 BiocGenerics_0.2.0 > > loaded via a namespace (and not attached): > [1] grid_2.15.1 tools_2.15.1 > > -- > shan gao > Room 231(Dr.Fei lab) > Boyce Thompson Institute > Cornell University > Tower Road, Ithaca, NY 14853-1801 > Office phone: 1-607-254-1267(day) > Official email:sg839 at cornell.edu > Facebook:http://www.facebook.com/profile.php?id=100001986532253 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact