Question

Convert Affy SNP array 0, 1, 2 to A C G T

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Fabrice Tourre ▴ 970

@fabrice-tourre-4394

Last seen 10.2 years ago

Dear list, Is there some bioconductor tools to convert Affy SNP array genotype 0, 1, 2 to A C G T? Thank you

SNP affy convert SNP affy convert • 1.1k views

ADD COMMENT • link 12.1 years ago Fabrice Tourre ▴ 970

score 0 · Answer 1 · 2012-10-27

The data is produced by apt-probeset-genotype. The default format of apt-probeset-genotype output is 0,1, 2, and -1. I want to convert that output genotype calls in format ACTG and referred to the forward genome strand. Thanks On Sat, Oct 27, 2012 at 6:22 PM, Fabrice Tourre <fabrice.ciup at="" gmail.com=""> wrote: > Dear list, > > Is there some bioconductor tools to convert Affy SNP array genotype 0, > 1, 2 to A C G T? > > Thank you