Thank you Kasper. Looking forward to it then. Khadeeja ________________________________ From: Kasper Daniel Hansen <kasperdanielhansen@gmail.com> Cc: "bioconductor@r-project.org" <bioconductor@r-project.org> Sent: Tuesday, November 6, 2012 3:40 PM Subject: Re: [BioC] dmrFdr The 450k array is not a CHARM style array, so the package won't work out of the box.� We are finishing up our approach for doing what you want to do, and plan to release it in minfi shortly. Kasper > Hello, > > I have run dmrFinder ( in CHARM) on 450k data but when I try to apply dmrFdr to the output from dmrFinder, it does not seem to identify the array annotation package. I have tried package="IlluminaHumanMethylation450k.db" and also package="IlluminaHumanMethylation450kmanifest" and neither seems to work. Would be great if someone could point out the right annotation package for 450k data in dmrFinder. > > Thanks, > Khadeeja >� � � � [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]