Dear all: I'm trying to load cuffdiff output with cummeRbund, but I have a problem with "#" characters present in the output files. How can avoid this problem? This is the error message Creating database /data/projects/LL/comp/test_cdout/cuffData.db Reading Run Info File /data/projects/LL/comp/test/04_DE/test_cdout/run.info Writing runInfo Table Reading Read Group Info /data/projects/LL/comp/test/04_DE/test_cdout/ read_groups.info Writing replicates Table Reading /data/projects/LL/comp/test/04_DE/test_cdout/genes.fpkm_tracking Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 7021 did not have 17 elements Thanks in advance, Estefania [[alternative HTML version deleted]]