All, Is there a Bioconductor package by which one can visualize the alignment of multiple peptide sequences along a known protein? For example, I would like to provide some number of short sequences and visualize where these fall along the full protein sequence. I'm also curious if anyone knows any other options for this task. Thanks, Juliet

There is the "classic" set of tools for multiple sequence alignment: http://www.clustal.org/ ClustalX for windows, user friendly. There is "probably" an R -interface? -----Original Message----- From: Juliet Hannah <juliet.hannah@gmail.com> To: bioconductor at r-project.org Subject: [BioC] visualizing peptide alignments Date: Sun, 2 Dec 2012 23:23:34 -0500 All, Is there a Bioconductor package by which one can visualize the alignment of multiple peptide sequences along a known protein? For example, I would like to provide some number of short sequences and visualize where these fall along the full protein sequence. I'm also curious if anyone knows any other options for this task. Thanks, Juliet _______________________________________________ Bioconductor mailing list Bioconductor at r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor