coXpress package
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TriS ▴ 200
@tris-5635
Last seen 4.3 years ago
United States
hi all i'm trying to install the coXpress package but, running R 2.15.1 i get the followig error: "Error: package ?coXpress? was built before R 2.10.0: please re- install it" i did re-install it but nothing changed, any idea? thanks Seb R version 2.15.1 (2012-06-22) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] EBcoexpress_1.2.0 minqa_1.2.1 Rcpp_0.10.1 mclust_4.0 [5] EBarrays_2.22.0 lattice_0.20-10 Biobase_2.18.0 BiocGenerics_0.4.0 loaded via a namespace (and not attached): [1] cluster_1.14.3 grid_2.15.1 tools_2.15.1
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 5 months ago
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On Sat, Dec 15, 2012 at 4:10 PM, Seb <seba.bat at="" gmail.com=""> wrote: > hi all > > i'm trying to install the coXpress package but, running R 2.15.1 i get > the followig error: > > "Error: package ?coXpress? was built before R 2.10.0: please re- install it" > > i did re-install it but nothing changed, any idea? > coXpress is not a bioconductor package. Are you talking about EBcoexpress? If so, it looks like you already have the appropriate version installed for your version of R. If you are having trouble loading EBcoexpress, try starting a fresh R session, preferably like this: R --vanilla Then: source("http://bioconductor.org/biocLite.R") biocLite("EBcoexpress") library(EBcoexpress) Dan > thanks > > Seb > > > > > R version 2.15.1 (2012-06-22) > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] EBcoexpress_1.2.0 minqa_1.2.1 Rcpp_0.10.1 mclust_4.0 > [5] EBarrays_2.22.0 lattice_0.20-10 Biobase_2.18.0 BiocGenerics_0.4.0 > > loaded via a namespace (and not attached): > [1] cluster_1.14.3 grid_2.15.1 tools_2.15.1 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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i do have EBcoexpress but it's giving me all sorts of problems (i will send a separate email with that). so i thought about using a different package. otherwise any other suggestion for alternatives? thanks Seb On Sat, Dec 15, 2012 at 7:40 PM, Dan Tenenbaum <dtenenba at="" fhcrc.org=""> wrote: > On Sat, Dec 15, 2012 at 4:10 PM, Seb <seba.bat at="" gmail.com=""> wrote: >> hi all >> >> i'm trying to install the coXpress package but, running R 2.15.1 i get >> the followig error: >> >> "Error: package ?coXpress? was built before R 2.10.0: please re- install it" >> >> i did re-install it but nothing changed, any idea? >> > > > coXpress is not a bioconductor package. > > Are you talking about EBcoexpress? > > If so, it looks like you already have the appropriate version > installed for your version of R. > If you are having trouble loading EBcoexpress, try starting a fresh R > session, preferably like this: > > R --vanilla > > Then: > > source("http://bioconductor.org/biocLite.R") > biocLite("EBcoexpress") > library(EBcoexpress) > > Dan > > > > >> thanks >> >> Seb >> >> >> >> >> R version 2.15.1 (2012-06-22) >> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >> >> locale: >> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> other attached packages: >> [1] EBcoexpress_1.2.0 minqa_1.2.1 Rcpp_0.10.1 mclust_4.0 >> [5] EBarrays_2.22.0 lattice_0.20-10 Biobase_2.18.0 BiocGenerics_0.4.0 >> >> loaded via a namespace (and not attached): >> [1] cluster_1.14.3 grid_2.15.1 tools_2.15.1 >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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