Entering edit mode
Fong Chun Chan
▴
320
@fong-chun-chan-5706
Last seen 10.5 years ago
Hi,
I am using the R package, Genomic Features, to get Intron Expression
and
the function that I am using is the intronsByTranscript(). While this
function is useful, it returns the number of raw reads that align to
each
intron grouped at the transcript level. Is there an easy way to get it
to
group it by a gene such that I am grabbing all the introns that fall
in all
the transcripts belong to a gene (and without double counting the
intronic
space).
Similar, is there a way to easily get the raw read count at an
individual
intron level rather than having it grouped? The introns() function
seems to
be defunct now as it recommends that we use the intronsByTranscript()
function.
Thanks,
Fong
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