Required Annotation Package for Agilent-021974
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Ahmad ▴ 20
@ahmad-5751
Last seen 9.7 years ago
Dear Sir, I need annotation package for *Agilent-021974 Syn_PCC6803_transcriptome . * * * *Platform GPL8567<http: www.ncbi.nlm.nih.gov="" geo="" query="" acc.cgi?acc="GPL8567"> * Details are here. StatusPublic on May 20, 2009TitleAgilent-021974 Syn_PCC6803_transcriptomeTechnology typein situ oligonucleotideDistributioncustom- commercialOrganismSynechocystis sp. PCC 6803<http: www.ncbi.nlm.nih.gov="" taxonomy="" browser="" wwwtax.cgi?m="" ode="Info&amp;id=1148"> ManufacturerAgilent TechnologiesManufacture protocolsee manufacturer's web site at http://www.agilent.com/ It will be a very great help for me if u guide me how to obtain the annotation package for above mentioned Array. Thanking You Ahmad [[alternative HTML version deleted]]
Annotation Annotation • 720 views
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Tim Triche ★ 4.2k
@tim-triche-3561
Last seen 3.7 years ago
United States
Doesn't look like an annotation package (per se) exists. GEOquery will attempt to pull the data into an ExpressionSet whereby the featureData will contain the genomic coordinates and other provided information; further annotation would then be up to you, as there does not seem to exist either an organism package for Synechocystis nor a package for this custom chip. So, the fastest way to pull in what information does exist would be GEOquery. best, -t On Thu, Feb 7, 2013 at 4:25 AM, Ahmad <ahmad235@gmail.com> wrote: > Dear Sir, > I need annotation package for *Agilent-021974 Syn_PCC6803_transcriptome . > * > * > * > *Platform GPL8567< > http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL8567> > * > > Details are here. > > StatusPublic on May 20, 2009TitleAgilent-021974 > Syn_PCC6803_transcriptomeTechnology > typein situ > oligonucleotideDistributioncustom-commercialOrganismSynechocystis > sp. PCC 6803< > http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id =1148> > ManufacturerAgilent TechnologiesManufacture protocolsee manufacturer's web > site at http://www.agilent.com/ > > It will be a very great help for me if u guide me how to obtain the > annotation package for above mentioned Array. > > Thanking You > Ahmad > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- *A model is a lie that helps you see the truth.* * * Howard Skipper<http: cancerres.aacrjournals.org="" content="" 31="" 9="" 1173.full.pdf=""> [[alternative HTML version deleted]]
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