limma publications
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Naomi Altman ★ 6.0k
@naomi-altman-380
Last seen 3.9 years ago
United States
Me, too. One of the reasons that SAM is popular, is that it is popular (i.e. since everyone has heard of it, it makes reviewers happy). So, it would be nice to be able to point to publications in good journals so that reviewers will be comfortable. (I personally, am quite comfortable with SAM). --Naomi At 04:38 PM 4/27/2004 +0200, Julia Engelmann wrote: >Hi Bioconductor users, > >has anyone published data using "limma" for microarray analysis and would >point me to it? > >Thanks a lot, >Julia > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Naomi S. Altman 814-865-3791 (voice) Associate Professor Bioinformatics Consulting Center Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111
Microarray Microarray • 867 views
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Naomi Altman ★ 6.0k
@naomi-altman-380
Last seen 3.9 years ago
United States
Oops, must have been a Freudian slip. Actually, I am not perfectly comfortable with SAM. But I am quite comfortable with limma. --Naomi At 12:42 PM 6/22/2004 -0400, Naomi Altman wrote: >Me, too. > >One of the reasons that SAM is popular, is that it is popular (i.e. since >everyone has heard of it, it makes reviewers happy). So, it would be nice >to be able to point to publications in good journals so that reviewers >will be comfortable. (I personally, am quite comfortable with SAM). > >--Naomi > >At 04:38 PM 4/27/2004 +0200, Julia Engelmann wrote: > >>Hi Bioconductor users, >> >>has anyone published data using "limma" for microarray analysis and would >>point me to it? >> >>Thanks a lot, >>Julia >> >>_______________________________________________ >>Bioconductor mailing list >>Bioconductor@stat.math.ethz.ch >>https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > >Naomi S. Altman 814-865-3791 (voice) >Associate Professor >Bioinformatics Consulting Center >Dept. of Statistics 814-863-7114 (fax) >Penn State University 814-865-1348 (Statistics) >University Park, PA 16802-2111 > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Naomi S. Altman 814-865-3791 (voice) Associate Professor Bioinformatics Consulting Center Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111
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I don't know of published papers yet which used limma analysis for differential expression. I think one just has to be patient. I've worked on 10-20 microarray experiments over the past few years and only one has reached the stage of being submitted for publication yet. There are lots of microarray groups using limma or limma-derived stuff now for differential expression (e.g., http://www.biotech.kth.se/molbio/microarray or http://www.lcb.uu.se/baseplugins.php) so papers will come eventually. Cheers Gordon At 02:46 AM 23/06/2004, Naomi Altman wrote: >Oops, must have been a Freudian slip. Actually, I am not perfectly >comfortable with SAM. But I am quite comfortable with limma. > >--Naomi > >At 12:42 PM 6/22/2004 -0400, Naomi Altman wrote: >>Me, too. >> >>One of the reasons that SAM is popular, is that it is popular (i.e. since >>everyone has heard of it, it makes reviewers happy). So, it would be >>nice to be able to point to publications in good journals so that >>reviewers will be comfortable. (I personally, am quite comfortable with SAM). >> >>--Naomi >> >>At 04:38 PM 4/27/2004 +0200, Julia Engelmann wrote: >>>Hi Bioconductor users, >>> >>>has anyone published data using "limma" for microarray analysis and would >>>point me to it? >>> >>>Thanks a lot, >>>Julia
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