Hi, It seems to me the reactome.db package is based on human content of the Reactome database (Entrez identifiers, mappings to GO, etc). I would be delighted to see support added for other organisms (especially for mouse) as Reactome database anyhow supports them. Any plans for that yet? - Asta

Hi Asta, reactome.db is useful for several organisms already. So for example: library(reactome.db) ## suppose we have some moust entrez gene IDs that are mapped to reactome ## (note: not all of them will be. Only the subset of IDs that have entries in the reactome database.) keys <- c("100034361", "100037258", "100038833") select(reactome.db, keys, c("PATHID", "PATHNAME"), 'ENTREZID') Marc On 05/10/2013 03:18 AM, Asta Laiho wrote: > Hi, > > It seems to me the reactome.db package is based on human content of the Reactome database (Entrez identifiers, mappings to GO, etc). I would be delighted to see support added for other organisms (especially for mouse) as Reactome database anyhow supports them. Any plans for that yet? > > - Asta > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor