Package \'jmosaics\' not found
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Guest User ★ 13k
@guest-user-4897
Last seen 11.3 years ago
Hello, I'm trying to install the package 'jmosaics' (http://bioconductor.org/packages/release/bioc/html/jmosaics.html) I'm getting back an error saying the Package 'jmosaics' not available (for R version 2.15.2). The pckage discription says it is compatible with R 2.15.2. My operating system is CentOS 6.4 and I'm starting R as follows: sudo R --vanilla Thanks Mahmoud -- output of sessionInfo(): R version 2.15.2 (2012-10-26) Platform: x86_64-redhat-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.8.3 loaded via a namespace (and not attached): [1] tools_2.15.2 -- Sent via the guest posting facility at bioconductor.org.
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@steve-lianoglou-2771
Last seen 8 weeks ago
United States
Hi Mahmoud, On Tuesday, May 21, 2013, Mahmoud [guest] wrote: > > Hello, > > I'm trying to install the package 'jmosaics' ( > http://bioconductor.org/packages/release/bioc/html/jmosaics.html) > > I'm getting back an error saying the Package 'jmosaics' not available (for > R version 2.15.2). The pckage discription says it is compatible with R > 2.15.2. Does it really say that? If you read tr page you linked to a bit more closely you'll see that this package has been available in bioconductor since bioc-2.12 (R-3.0) If you want to use the package in the "supported" way, you are going to have to update to R-3.0 and reinstall your packages via biocLite. HTH, -steve -- Steve Lianoglou Computational Biologist Department of Bioinformatics and Computational Biology Genentech [[alternative HTML version deleted]]
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It does say R >= 2.15.2 in the Depends, which is misleading. Jim On 5/21/2013 11:11 AM, Steve Lianoglou wrote: > Hi Mahmoud, > > On Tuesday, May 21, 2013, Mahmoud [guest] wrote: > >> Hello, >> >> I'm trying to install the package 'jmosaics' ( >> http://bioconductor.org/packages/release/bioc/html/jmosaics.html) >> >> I'm getting back an error saying the Package 'jmosaics' not available (for >> R version 2.15.2). The pckage discription says it is compatible with R >> 2.15.2. > > Does it really say that? > > If you read tr page you linked to a bit more closely you'll see that this > package has been available in bioconductor since bioc-2.12 (R-3.0) > > If you want to use the package in the "supported" way, you are going to > have to update to R-3.0 and reinstall your packages via biocLite. > > HTH, > -steve > > > -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099
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