Hi, when I try to install limma, I get the error message below. Can someone please give me a hint - thanks, Ina installing *source* package ?limma? ... ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o normexp.c: In function ?fit_saddle_nelder_mead?: normexp.c:153: warning: floating constant exceeds range of ?double? gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib64/R/lib -lR installing to /usr/local/lib/R/site-library/limma/libs ** R ** inst ** preparing package for lazy loading Error : unknown namespace directive: function(lib, pkg) require(methods) ERROR: lazy loading failed for package ?limma? * removing ?/usr/local/lib/R/site-library/limma? > sessionInfo() R version 3.0.0 (2013-04-03) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tcltk_3.0.0 tools_3.0.0

sorry please forget previous post - I fixed it ... ----- Original Message ----- From: "Ina Hoeschele" <inah@vbi.vt.edu> To: "bioconductor" <bioconductor at="" stat.math.ethz.ch="">, "bioconductor" <bioconductor at="" stat.math.ethz.ch=""> Sent: Thursday, May 23, 2013 1:49:29 PM Subject: [BioC] problem installing limma Hi, when I try to install limma, I get the error message below. Can someone please give me a hint - thanks, Ina installing *source* package ?limma? ... ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o normexp.c: In function ?fit_saddle_nelder_mead?: normexp.c:153: warning: floating constant exceeds range of ?double? gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib64/R/lib -lR installing to /usr/local/lib/R/site-library/limma/libs ** R ** inst ** preparing package for lazy loading Error : unknown namespace directive: function(lib, pkg) require(methods) ERROR: lazy loading failed for package ?limma? * removing ?/usr/local/lib/R/site-library/limma? > sessionInfo() R version 3.0.0 (2013-04-03) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tcltk_3.0.0 tools_3.0.0 _______________________________________________ Bioconductor mailing list Bioconductor at r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor