Hello everyone, Is there a way to create granges object from a fastq obtained from readFastq? Thanks you very much, Frederic

Hi Frederic, readFastq() produces a ShortReadQ object that holds sequences, quality scores and id's from the fastq file. A ShortReadQ cannot be coerced to a GRanges because there are no positions (chromosome, start, width, etc.). Position is not available because these are unaligned reads. Valerie On 07/23/2013 08:01 AM, Frederic Fournier wrote: > Hello everyone, > > Is there a way to create granges object from a fastq obtained from > readFastq? > > Thanks you very much, > > Frederic > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor