Hi, It's honestly kind of hard to tell from your post what it is that you were doing. You might want to have a look at the posting guide here: http://www.bioconductor.org/help/mailing-list/posting-guide/ BUT: if I make the assumption that the IDS you listed are entrez gene IDs. And that you want tair and GO information mapped to them, here is how I would do that: library(org.At.tair.db) k = c("839235", "838362", "838961", "837091", "837455", "837543") select( org.At.tair.db, keys=k, columns=c("TAIR","GO"), "ENTREZID") Hope this helps, Marc On 08/21/2013 01:52 PM, d [guest] wrote: > While applying basicprofiles on 316 entrez IDs in Arabidopsis it is giving error of "subscript out of bounds". > > -- output of sessionInfo(): > >> a<-read.table("tair_ids to gene_ids.csv" ,header=TRUE,sep=",") > >> b<-as.character(a[,2]) >> head(b) > [1] "839235" "838362" "838961" "837091" "837455" "837543" > >> h<-basicProfile(b,idType="Entrez",onto ="ANY",level=2,orgPackage="org.At.tair.db",ord=FALSE) > Error in GOtermslist[[i]] : subscript out of bounds > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor