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Voke AO
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@voke-ao-4830
Last seen 10.3 years ago
Hi all,
I was attempting to calculate Fst on some 1000 genomes data in binary
plink
format but I encountered this error below and I'm not quite sure how
to get
around it. Any suggestions will be greatly appreciated.
Thanks
Avoks
> MySample=read.plink("MyAFR_Plus")
> MyAttrib = read.delim("MyAFR", header = TRUE)
> MyAttrib = MyAttrib$Pop
> FstAFR = Fst(MySample, MAttrib)
Error in Fst(MySample, MyAttrib) :
STRING_ELT() can only be applied to a 'character vector', not a
'NULL'
> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: i386-w64-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_xxx LC_CTYPE=English_xxx
[3] LC_MONETARY=English_xxx LC_NUMERIC=C
[5] LC_TIME=English_xxx
attached base packages:
[1] grid splines stats graphics grDevices utils
datasets
[8] methods base
other attached packages:
[1] hexbin_1.26.2 snpStats_1.10.0 Matrix_1.0-12 lattice_0.20-23
[5] survival_2.37-4
loaded via a namespace (and not attached):
[1] BiocGenerics_0.6.0 parallel_3.0.1
>
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