mifi unable to install by bioLite
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@hitoshi-okada-6180
Last seen 10.2 years ago
Hi, I have installed R version 3.0.2 (MacOS 10.8.5) and lumi, and tried to load but failed with the message that "there is no package called ?minfi?". I tried to install mifi by bilLite but could not with message below. BioC_mirror: http://bioconductor.org Using Bioconductor version 2.13 (BiocInstaller 1.11.4), R version 3.0.2. Installing package(s) 'minfi' Warning message: package ?minfi? is not available (for R version 3.0.2) I appreciate any suggestions to solve this problem. I have updated Bioconductor packages are updated. Thank you Hitoshi
lumi lumi • 1.8k views
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Tim Triche ★ 4.2k
@tim-triche-3561
Last seen 4.2 years ago
United States
The builds for minfi were failing up until recently. As of the most recent build report it appears that R CMD check still fails for minfi. You may have to wait a day or two for minfi to become stable again. *He that would live in peace and at ease, * *Must not speak all he knows, nor judge all he sees.* * * Benjamin Franklin, Poor Richard's Almanack<http: archive.org="" details="" poorrichardsalma00franrich=""> On Fri, Oct 11, 2013 at 9:44 AM, Hitoshi Okada <hokada0421@gmail.com> wrote: > Hi, > > I have installed R version 3.0.2 (MacOS 10.8.5) and lumi, and tried to > load but failed with the message that "there is no package called > ‘minfi’". > I tried to install mifi by bilLite but could not with message below. > > > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.13 (BiocInstaller 1.11.4), R version 3.0.2. > Installing package(s) 'minfi' > Warning message: > package ‘minfi’ is not available (for R version 3.0.2) > > I appreciate any suggestions to solve this problem. I have updated > Bioconductor packages are updated. > > Thank you > > Hitoshi > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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Right now everything is a bit unusual because the next release of Bioconductor is in a few days. Best, Kasper On Sat, Oct 12, 2013 at 2:33 PM, Tim Triche, Jr. <tim.triche@gmail.com>wrote: > The builds for minfi were failing up until recently. As of the most recent > build report it appears that R CMD check still fails for minfi. You may > have to wait a day or two for minfi to become stable again. > > > *He that would live in peace and at ease, * > *Must not speak all he knows, nor judge all he sees.* > * > * > Benjamin Franklin, Poor Richard's > Almanack<http: archive.org="" details="" poorrichardsalma00franrich=""> > > > On Fri, Oct 11, 2013 at 9:44 AM, Hitoshi Okada <hokada0421@gmail.com> > wrote: > > > Hi, > > > > I have installed R version 3.0.2 (MacOS 10.8.5) and lumi, and tried to > > load but failed with the message that "there is no package called > > ‘minfi’". > > I tried to install mifi by bilLite but could not with message below. > > > > > > BioC_mirror: http://bioconductor.org > > Using Bioconductor version 2.13 (BiocInstaller 1.11.4), R version 3.0.2. > > Installing package(s) 'minfi' > > Warning message: > > package ‘minfi’ is not available (for R version 3.0.2) > > > > I appreciate any suggestions to solve this problem. I have updated > > Bioconductor packages are updated. > > > > Thank you > > > > Hitoshi > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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minfi is finally available. Thanks for your patience. Dan ----- Original Message ----- > From: "Kasper Daniel Hansen" <kasperdanielhansen at="" gmail.com=""> > To: ttriche at usc.edu > Cc: "Hitoshi Okada" <hokada0421 at="" gmail.com="">, bioconductor at r-project.org > Sent: Saturday, October 12, 2013 11:51:15 AM > Subject: Re: [BioC] mifi unable to install by bioLite > > Right now everything is a bit unusual because the next release of > Bioconductor is in a few days. > > Best, > Kasper > > > On Sat, Oct 12, 2013 at 2:33 PM, Tim Triche, Jr. > <tim.triche at="" gmail.com="">wrote: > > > The builds for minfi were failing up until recently. As of the > > most recent > > build report it appears that R CMD check still fails for minfi. > > You may > > have to wait a day or two for minfi to become stable again. > > > > > > *He that would live in peace and at ease, * > > *Must not speak all he knows, nor judge all he sees.* > > * > > * > > Benjamin Franklin, Poor Richard's > > Almanack<http: archive.org="" details="" poorrichardsalma00franrich=""> > > > > > > On Fri, Oct 11, 2013 at 9:44 AM, Hitoshi Okada > > <hokada0421 at="" gmail.com=""> > > wrote: > > > > > Hi, > > > > > > I have installed R version 3.0.2 (MacOS 10.8.5) and lumi, and > > > tried to > > > load but failed with the message that "there is no package > > > called > > > ?minfi?". > > > I tried to install mifi by bilLite but could not with message > > > below. > > > > > > > > > BioC_mirror: http://bioconductor.org > > > Using Bioconductor version 2.13 (BiocInstaller 1.11.4), R version > > > 3.0.2. > > > Installing package(s) 'minfi' > > > Warning message: > > > package ?minfi? is not available (for R version 3.0.2) > > > > > > I appreciate any suggestions to solve this problem. I have > > > updated > > > Bioconductor packages are updated. > > > > > > Thank you > > > > > > Hitoshi > > > > > > _______________________________________________ > > > Bioconductor mailing list > > > Bioconductor at r-project.org > > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > > Search the archives: > > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > > > [[alternative HTML version deleted]] > > > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor
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