HI, I try to install geneplotter. li at li-Lenovo:~$ R CMD INSTALL /home/li/geneplotter_1.40.0.tar.gz * installing to library ???/home/li/R/x86_64-pc-linux-gnu- library/2.15??? * installing *source* package ???geneplotter??? ... ** R ** data ** inst ** preparing package for lazy loading No methods found in "BiocGenerics" for requests: plotMA Error in setMethod("plotMA", signature(object = "data.frame"), function(object, : no existing definition for function ???plotMA??? Error : unable to load R code in package ???geneplotter??? ERROR: lazy loading failed for package ???geneplotter??? * removing ???/home/li/R/x86_64-pc-linux-gnu- library/2.15/geneplotter??? Any help are appreciated! Yue -- output of sessionInfo(): li at li-Lenovo:~$ R CMD INSTALL /home/li/geneplotter_1.40.0.tar.gz * installing to library ???/home/li/R/x86_64-pc-linux-gnu- library/2.15??? * installing *source* package ???geneplotter??? ... ** R ** data ** inst ** preparing package for lazy loading No methods found in "BiocGenerics" for requests: plotMA Error in setMethod("plotMA", signature(object = "data.frame"), function(object, : no existing definition for function ???plotMA??? Error : unable to load R code in package ???geneplotter??? ERROR: lazy loading failed for package ???geneplotter??? * removing ???/home/li/R/x86_64-pc-linux-gnu- library/2.15/geneplotter??? -- Sent via the guest posting facility at bioconductor.org.

You shouldn't be using install.packages. Instead use biocLite: http://www.bioconductor.org/install/ Also, you should upgrade to R-3.0.2. Best, Jim On Tuesday, December 17, 2013 4:18:28 AM, liyue [guest] wrote: > > HI, > > I try to install geneplotter. > > li at li-Lenovo:~$ R CMD INSTALL /home/li/geneplotter_1.40.0.tar.gz > * installing to library ???/home/li/R/x86_64-pc-linux-gnu- library/2.15??? > * installing *source* package ???geneplotter??? ... > ** R > ** data > ** inst > ** preparing package for lazy loading > No methods found in "BiocGenerics" for requests: plotMA > Error in setMethod("plotMA", signature(object = "data.frame"), function(object, : > no existing definition for function ???plotMA??? > Error : unable to load R code in package ???geneplotter??? > ERROR: lazy loading failed for package ???geneplotter??? > * removing ???/home/li/R/x86_64-pc-linux-gnu- library/2.15/geneplotter??? > > Any help are appreciated! > > Yue > > -- output of sessionInfo(): > > li at li-Lenovo:~$ R CMD INSTALL /home/li/geneplotter_1.40.0.tar.gz > * installing to library ???/home/li/R/x86_64-pc-linux-gnu- library/2.15??? > * installing *source* package ???geneplotter??? ... > ** R > ** data > ** inst > ** preparing package for lazy loading > No methods found in "BiocGenerics" for requests: plotMA > Error in setMethod("plotMA", signature(object = "data.frame"), function(object, : > no existing definition for function ???plotMA??? > Error : unable to load R code in package ???geneplotter??? > ERROR: lazy loading failed for package ???geneplotter??? > * removing ???/home/li/R/x86_64-pc-linux-gnu- library/2.15/geneplotter??? > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099