We have a dataset including paired samples (treatment/no treatment) within subject for many subjects. Is there a specific method in Limma for dealing with this situation or is subject just treated as another factor? Thanks, Sean

Sorry. I found at least partial answers in the list archives. If anyone wants to offer insight, feel free, but I think I have enough. Sean On Aug 17, 2004, at 11:43 AM, Sean Davis wrote: > We have a dataset including paired samples (treatment/no treatment) > within subject for many subjects. Is there a specific method in Limma > for dealing with this situation or is subject just treated as another > factor? > > Thanks, > Sean > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor