I want to install rMAT_3.12.0, after setup gsl-1.16 and AMD BLAS(acml),I still got error,the message follows; [root@localhost Downloads]# sh -v code.sh LD_LIBRARY_PATH=/usr/lib64/:/usr/local/lib:/lib64:/opt/acml5.3.1/gfort ran64/lib/ R CMD INSTALL rMAT_3.12.0.tar.gz --configure-args="--with- blas='-L/opt/acml5.3.1/gfortran64/lib/ -lacml'" * installing to library ¡®/usr/local/lib64/R/library¡¯ * installing *source* package ¡®rMAT¡¯ ... R_HOME: /usr/local/lib64/R checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GSL... no checking for gsl-config... /usr/local/bin/gsl-config checking for GSL - version >= 1.6... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dispatch/dispatch.h usability... no checking dispatch/dispatch.h presence... no checking for dispatch/dispatch.h... no checking omp.h usability... yes checking omp.h presence... yes checking for omp.h... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BARFileData.cpp -o BARFileData.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BARFileWriter.cpp -o BARFileWriter.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BARReader.cpp -o BARReader.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BARWriter.cpp -o BARWriter.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BPMAPFileData.cpp -o BPMAPFileData.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BPMAPfunctions.cpp -o BPMAPfunctions.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c DeclareAll.c -o DeclareAll.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c FileIO.cpp -o FileIO.o g++ -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c FileWriter.cpp -o FileWriter.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c NormalizeProbes.c -o NormalizeProbes.o g++ -shared -L/usr/local/lib64 -o rMAT.so BARFileData.o BARFileWriter.o BARReader.o BARWriter.o BPMAPFileData.o BPMAPfunctions.o DeclareAll.o FileIO.o FileWriter.o NormalizeProbes.o -lgsl -L/opt/acml5.3.1/gfortran64/lib/ -lacml -lm-lgomp -L/usr/local/lib64/R/lib -lR /usr/bin/ld: cannot find -lm-lgomp collect2: ld returned 1 exit status make: *** [rMAT.so] Error 1 ERROR: compilation failed for package ¡®rMAT¡¯ * removing ¡®/usr/local/lib64/R/library/rMAT I am sure there is libgomp.so and libm.so in /usr/lib64. any help would be appreciate! > sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods [7] base other attached packages: [1] BiocInstaller_1.12.0 loaded via a namespace (and not attached): [1] tools_3.0.2 [[alternative HTML version deleted]]